Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,286,963 – 18,287,176 |
Length | 213 |
Max. P | 0.670637 |
Location | 18,286,963 – 18,287,076 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.29 |
Mean single sequence MFE | -25.74 |
Consensus MFE | -20.23 |
Energy contribution | -19.85 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.49 |
Structure conservation index | 0.79 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18286963 113 - 22224390 CUUU--CACCCCGUGGAAUACCCAAUUCACCCAUC-----ACAAGAGUUCAGCCAGGUCGGUGGUUCCUAUGCUCCAGCGAAUUCCUGGUAAACGUUUUACAUAUUGUAAAAUAACAAUA ....--......(((((........))))).....-----......(((..(((((((((.(((..........))).)))...)))))).)))(((((((.....)))))))....... ( -24.40) >DroSec_CAF1 77 117 - 1 CUUU--CGCCCC-UGGAAUACCCAAAACACCCGCCUCCCCUCGAGAGUUCAGCCAGGUCGGUGGUUCCUAUGCUCCAGCGAAUUCCUGGUAAACGUUUUACAUAUUGUAAAAUAACAAUA ((((--((....-.(((..................)))...))))))....(((((((((.(((..........))).)))...))))))....(((((((.....)))))))....... ( -25.77) >DroSim_CAF1 120 117 - 1 CUUU--CGCCCC-UGGAAUACCCAAAACACCCGCCUCCCCUCGAGAGUUCAGCCAGGUCGGUGGUUCCUAUGCUCCAGCGAAUUCCUGGUAAACGUUUUACAUAUUGUAAAAUAACAAUA ((((--((....-.(((..................)))...))))))....(((((((((.(((..........))).)))...))))))....(((((((.....)))))))....... ( -25.77) >DroYak_CAF1 120 101 - 1 CUUUUCCGCCCC-UU---UUCCCAAA---------------CGGCAGCUCGACCAGGUCGCUGGUUUCUACGCUCCGGCGAAUUCCUGGUAAACGUUUUACAUAUUGUAAAAUAACAAUA .......(((..-..---........---------------.)))......(((((((((((((..........)))))))...))))))....(((((((.....)))))))....... ( -27.02) >consensus CUUU__CGCCCC_UGGAAUACCCAAAACACCCGCC_____UCGAGAGUUCAGCCAGGUCGGUGGUUCCUAUGCUCCAGCGAAUUCCUGGUAAACGUUUUACAUAUUGUAAAAUAACAAUA ...................................................(((((((((.(((..........))).)))...))))))....(((((((.....)))))))....... (-20.23 = -19.85 + -0.38)
Location | 18,287,076 – 18,287,176 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.38 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -22.30 |
Energy contribution | -22.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.64 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18287076 100 - 22224390 AGCGAUGGC-GAAUUGAAGGGGUUAGCAAAUGGCAAACGACUUUGACAAAUACCCCAAUGCAGGGAGG--UGGUGAAAGCAGCCUUUCAGCC-----------------AGCCGCCACAC .(((.((((-........(((((...((((.(........)))))......)))))......(..(((--(.((....)).))))..).)))-----------------)..)))..... ( -33.60) >DroSec_CAF1 194 104 - 1 AGCGAUGGG-GAAUUGAAGGGGUUAGCAAAUGGCAAACGACUUUGACAAAUACCCCAAUGCAGGGAGG--UGGUGAAAGCAGCCUUUCAGCCAGC-------------CAGCCGCCCCAC .(((.((((-(..(..(((..(((.((.....)).)))..)))..)......))))).)))..((.((--((((....((.((......))..))-------------..)))))))).. ( -35.20) >DroSim_CAF1 237 100 - 1 AGCGAUGGG-GAAUUGAAGGGGUUAGCAAAUGGCAAACGACUUUGACAAAUACCCCAAUGCAGGGAGG--UGGUGAAAGCAGCCUUUCAGCC-----------------AGCCGCCCCAC .(((.((((-(..(..(((..(((.((.....)).)))..)))..)......))))).))).(((.((--(((((((((....)))))).))-----------------).))..))).. ( -36.90) >DroYak_CAF1 221 120 - 1 GGAGAUGGGUUUAUUGAAGGGGUUAGCAAAUGGCAAACGACUUUGACAAAUACCCCAAUGCAGUAAGGUGUGGUGAAAGCAGCCUUUCAACUUGUCCCGCCCCUCAUCCUCCUUCCCCAU (((((((((.((((((..(((((...((((.(........)))))......)))))....))))))((((.((((((((....))))))......)))))).))))).))))........ ( -33.50) >consensus AGCGAUGGG_GAAUUGAAGGGGUUAGCAAAUGGCAAACGACUUUGACAAAUACCCCAAUGCAGGGAGG__UGGUGAAAGCAGCCUUUCAGCC_________________AGCCGCCCCAC .(((.((((....(..(((..(((.((.....)).)))..)))..).......))))..((.((((((....((....))..)))))).)).....................)))..... (-22.30 = -22.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:05 2006