| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,285,798 – 18,285,904 |
| Length | 106 |
| Max. P | 0.999956 |
| Location | 18,285,798 – 18,285,904 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.62 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -15.89 |
| Energy contribution | -16.90 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.58 |
| SVM decision value | 4.86 |
| SVM RNA-class probability | 0.999956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18285798 106 + 22224390 AG-GAGUGAUGGGAAAAUCAGUUGGUA-AGAG--CCCAUUUCCAUUUCCAUUCCCAUUUUAUUUUAUGCGUGCUUACACGCACUUACUUUUCCAUUCUCAAAGUUUUCCC .(-((((((((((((.......(((.(-(...--....)).)))......))))))).........((((((....))))))..........))))))............ ( -22.82) >DroSec_CAF1 5741 99 + 1 AGGGAAAGGUGGGAAAAUCAGUGGGUG-AGUG-GCCCACUUGCCUU-------CCAUUU--UCUUAUGCGUGCUUACACGCACUUACUUUUCCAUUCUCAAAGUUUUCCU .(((((((((((((((((....(((..-((((-...))))..))).-------..))))--))))))(((((....))))).....)))))))................. ( -34.80) >DroEre_CAF1 5401 92 + 1 AA-GAA-----GGAGACCGAGUGGAUGGAGUGCGCCCACU--CAUUUCCAUUC----------UCAUGCCUGCUCAUACGCACUCACUUUUCCAUUUCCACAGUUUUCCC ..-...-----(((((..(((((((..(((((....))))--)...)))))))----------...((..(((......)))..))........)))))........... ( -23.90) >consensus AG_GAA_G_UGGGAAAAUCAGUGGGUG_AGUG_GCCCACUU_CAUUUCCAUUCCCAUUU__U_UUAUGCGUGCUUACACGCACUUACUUUUCCAUUCUCAAAGUUUUCCC ..........((((((((.(((((((.......)))))))..........................((((((....))))))....................)))))))) (-15.89 = -16.90 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:03 2006