Locus 7325

Sequence ID X_DroMel_CAF1
Location 18,280,537 – 18,280,644
Length 107
Max. P 0.917899
window11995 window11996

overview

Window 5

Location 18,280,537 – 18,280,644
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 98.13
Mean single sequence MFE -29.60
Consensus MFE -28.22
Energy contribution -28.00
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.27
Structure conservation index 0.95
SVM decision value 1.12
SVM RNA-class probability 0.917899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18280537 107 + 22224390
GCACUAGAAAAAGAAGCCAGUAAAUUAUGGCACUUAUAGCAAGUCCUUUGGCUCGCCAAUUAAUGUAAUGAAUGGAGGAGCCAGGAGACGGCUCCAUCUUCAACCCC
............(((((((....(((((((.((((.....)))))).((((....)))).....)))))...))).((((((.(....)))))))..))))...... ( -29.70)
>DroSec_CAF1 513 107 + 1
GCACUAGAAAAAGAAGCCAGUAAAUUAUGGCACUUAUACCAAGUCCUUUGGCUCGCCAAUUAAUGUAAUGAAUGGAGGAGCCAAGAGACGGCUCCAUCUUCAACCCC
......(((...(.((((.........(((........))).(((.((((((((.(((.(((......))).)))..)))))))).))))))).)...)))...... ( -29.40)
>DroSim_CAF1 556 107 + 1
GCACUAAAAAAAGAAGCCAGUAAAUUAUGGCACUUAUACCAAGUCCUUUGGCUCGCCAAUUAAUGUAAUGAAUGGAGGAGCCAGGAGACGGCUCCAUCUUCAACCCC
............(((((((....(((((((.((((.....)))))).((((....)))).....)))))...))).((((((.(....)))))))..))))...... ( -29.70)
>consensus
GCACUAGAAAAAGAAGCCAGUAAAUUAUGGCACUUAUACCAAGUCCUUUGGCUCGCCAAUUAAUGUAAUGAAUGGAGGAGCCAGGAGACGGCUCCAUCUUCAACCCC
((.............((((........))))...........(((..(((((((.(((.(((......))).)))..)))))))..))).))............... (-28.22 = -28.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 18,280,537 – 18,280,644
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 98.13
Mean single sequence MFE -33.87
Consensus MFE -32.13
Energy contribution -32.24
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.28
Structure conservation index 0.95
SVM decision value 1.08
SVM RNA-class probability 0.911614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18280537 107 - 22224390
GGGGUUGAAGAUGGAGCCGUCUCCUGGCUCCUCCAUUCAUUACAUUAAUUGGCGAGCCAAAGGACUUGCUAUAAGUGCCAUAAUUUACUGGCUUCUUUUUCUAGUGC
......(((((.((((((((((..((((((..(((..............))).))))))..))))......(((((......)))))..)))))).)))))...... ( -31.24)
>DroSec_CAF1 513 107 - 1
GGGGUUGAAGAUGGAGCCGUCUCUUGGCUCCUCCAUUCAUUACAUUAAUUGGCGAGCCAAAGGACUUGGUAUAAGUGCCAUAAUUUACUGGCUUCUUUUUCUAGUGC
......(((((.(((((((((..(((((((..(((..............))).)))))))..))).(((((....))))).........)))))).)))))...... ( -36.74)
>DroSim_CAF1 556 107 - 1
GGGGUUGAAGAUGGAGCCGUCUCCUGGCUCCUCCAUUCAUUACAUUAAUUGGCGAGCCAAAGGACUUGGUAUAAGUGCCAUAAUUUACUGGCUUCUUUUUUUAGUGC
....(((((((.((((((((((..((((((..(((..............))).))))))..)))).(((((....))))).........))))))..)))))))... ( -33.64)
>consensus
GGGGUUGAAGAUGGAGCCGUCUCCUGGCUCCUCCAUUCAUUACAUUAAUUGGCGAGCCAAAGGACUUGGUAUAAGUGCCAUAAUUUACUGGCUUCUUUUUCUAGUGC
......(((((.((((((((((..((((((..(((..............))).))))))..)))).(((((....))))).........)))))).)))))...... (-32.13 = -32.24 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:01 2006