| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,277,186 – 18,277,281 |
| Length | 95 |
| Max. P | 0.506764 |
| Location | 18,277,186 – 18,277,281 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 70.89 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -5.69 |
| Energy contribution | -5.73 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.17 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18277186 95 + 22224390 UAAGGAUCCAGGCAGGAUCGGUAUCUGCAUCGGGA--UGAAAGGA--------GU-UCGUAUC-----------CAACAAAU-UGUAUCUGUAUCUG-GAUGCCCGCUGGAAUGCUGGA ......(((((.((...(((((....(((((.(((--((...(((--------..-.....))-----------).((....-.)).....))))).-)))))..)))))..))))))) ( -26.80) >DroSec_CAF1 4115 87 + 1 UA--------GGCAGGAUCGGGAUCUGCAUCGGGA--UGAGAGGA--------GU-UCGUAUC-----------CAUCAAAU-UGAAUCUGUAUCUG-GAUGCCCGCUGGAAUGCUGGA ..--------((((...((.((....(((((.(((--((((((((--------..-.....))-----------).((....-.)).))).))))).-)))))...)).)).))))... ( -25.60) >DroSim_CAF1 4429 97 + 1 UA-GGAUCCAGGCAGGAUCGGGAUCUGCAUCGGGA--UGUGAGGA--------GUUUCGUAUC-----------CAACAAAUUUGAAUCUGUAUCUGGGAUGCCCGCNNNNNNNNNNNN ..-.(((((.....)))))(((((((......(((--((((((..--------..))))))))-----------).(((.((....)).))).....)))).))).............. ( -21.50) >DroEre_CAF1 3270 111 + 1 UA-GAAUCUAGCCGGGAUCGGGAUCUGGAGCGGGU--UGCGAUGAGAUGCCCCGU-CCGGAUCCGGAGGAGGCCCAACAAAU-UGAAUCUGUAUCUG-GAUUCCCGCUG-AAUGCGGG- ..-((((((((..(((.((.(((((((((.((((.--.(((......))))))))-)))))))).)).....))).(((...-......)))..)))-)))))((((..-...)))).- ( -47.00) >DroYak_CAF1 4509 114 + 1 UA-GAAUCUAGGCAGGAUCGGGAUCUGGAUCGGGUAUCGGGAUGAGAUGCCGAGU-CCGGAUCCGGAGGAGGCCCAACAAAU-UGAAUCUGUAUCUG-GAUUCCUGCUG-AAUGCGGAA ..-(((((((((((((.((.((((((((((..((((((.......))))))..))-)))))))).))((....)).......-....)))))..)))-)))))((((..-...)))).. ( -49.20) >consensus UA_GAAUCCAGGCAGGAUCGGGAUCUGCAUCGGGA__UGAGAGGA________GU_UCGUAUC___________CAACAAAU_UGAAUCUGUAUCUG_GAUGCCCGCUG_AAUGCGGGA ...........(((((.......)))))..((((........(((................................................)))......))))............. ( -5.69 = -5.73 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:59 2006