Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,273,409 – 18,273,518 |
Length | 109 |
Max. P | 0.930896 |
Location | 18,273,409 – 18,273,518 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -18.67 |
Energy contribution | -18.99 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.64 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18273409 109 - 22224390 GUUUACAUAAUCUAGAUGCAA--CAUCUAGCAUCUGGUUUAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC---UUACAGAUCUAAUUAAACCAGAGAUGAAAA .....(((...(((((((...--)))))))..((((((((((((((..((..((((..(((..(((.....))))))..))---)).))...)))))))))))))).))).... ( -33.80) >DroSec_CAF1 573 101 - 1 GUUUACACAAUCUAGAUGACA--CAUCUAGCAUCUGGUUCAGUUUGCAUGCGAGGUUGUUAUUGGCAAUUAGC-----------UUACAGAUCUAAUUAGGCCAGAGAUUAAAA ...........(((((((...--)))))))..((((((..((((....((..(((((((.....)))))...)-----------)..)).....))))..))))))........ ( -22.60) >DroSim_CAF1 808 109 - 1 GUUUACACAAUCUAGAUGACA--CAUCUAGCAUCUGGUUCAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC---UUACAGAUCUAAUUAAGCCAGAGAUUAAAA ...........(((((((...--)))))))..(((((((.((((((..((..((((..(((..(((.....))))))..))---)).))...)))))).)))))))........ ( -29.10) >DroEre_CAF1 480 108 - 1 GCUUCCAUAAUCUAAAUGGCUGCGAUCUA--AUCUGGCUUAGUUGGCAUGCGAUGUUGUUAUUGGCAAUUAGCCUGCUGGC---UUACAGAUCUAAUU-AGCCGGAGAUUGAAA .......((((((...((((((.......--(((((....(((..(((.((...(((((.....)))))..)).)))..))---)..))))).....)-))))).))))))... ( -34.70) >DroYak_CAF1 585 109 - 1 GUUUUCAUAAUCUAGAUGGG-----UCUAACAUCUGGUUUAGUUGGUUUGCGAUGUUGUUAUUGGCAAUUAGCUUAGUUGUAAUCCGCUAAUCUAAUUCAACCAGAGAUUGAAA .......(((((((((....-----))))...(((((((.((((((...(((..((((..((((((.....)).))))..)))).)))....)))))).))))))))))))... ( -26.00) >consensus GUUUACAUAAUCUAGAUGACA__CAUCUAGCAUCUGGUUUAGUUAGCAUGCGAGGUUGUUAUUGGCAAUUAGCUUAGUGGC___UUACAGAUCUAAUUAAGCCAGAGAUUAAAA ........((((((((((.....))))))...(((((((.((((((...((...(((((.....)))))..))...................)))))).))))))))))).... (-18.67 = -18.99 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:59 2006