Locus 7321

Sequence ID X_DroMel_CAF1
Location 18,271,455 – 18,271,564
Length 109
Max. P 0.917593
window11990

overview

Window 0

Location 18,271,455 – 18,271,564
Length 109
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.67
Mean single sequence MFE -52.70
Consensus MFE -32.20
Energy contribution -32.48
Covariance contribution 0.28
Combinations/Pair 1.39
Mean z-score -2.68
Structure conservation index 0.61
SVM decision value 1.12
SVM RNA-class probability 0.917593
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18271455 109 + 22224390
CUGGCACUUCUCCUGGU---UGUCGCGGGUCUGGCCAUGAUUGCGGCCAGGCCAGGUCCACAGAAUCCGCUAGAGUCGCUGGGCAUGGGCGCCAUGUCUCUGGCCGGAAAUA
..((((((......)).---))))(.((..((((((.((........))))))))..)).)....((((((((((.((.(((((....)).))))).)))))).)))).... ( -45.80)
>DroSec_CAF1 39765 109 + 1
CUGGCACUUUUCCUGGU---UAUCGUGGGUCUGGCCAUGAUUGCGGCCAGGCCAGGUCCACAGAAUCCGCUAGAGUCGCUGGGCAUGGGCGCCAUGACUCUGGCCGGAAAUA
........(((((.((.---..((((((..((((((.((........))))))))..)))).))..))((((((((((.(((((....)).))))))))))))).))))).. ( -52.50)
>DroSim_CAF1 14401 109 + 1
CUGGCCCUUCUCCUGGU---UAUCGUGGGUCUGGCCAUGAUUGCGGCCAGGCCAGGUCCACAGAAUCCGCUAGAGUCGCUGGGCAUGGGCGCCAUGACUCUGGCCGGAAAUA
.(((((........)))---))..((((..((((((.((........))))))))..))))....(((((((((((((.(((((....)).)))))))))))).)))).... ( -52.60)
>DroEre_CAF1 44152 109 + 1
CUGGCACUGCUCCUGGU---GGCCGUGAGUCUGGCCAGGAUCGCGGCCAGGCCAGGGCCACAGAAUCCGCUCGAGUCGCUGGGCAUAGGCGCGAUGAGUCUGGCCGGGAAUA
(((((...(((((((.(---((((.((.((((((((........)))))))))).)))))))).((((((..(.(((....))).)..))).)))))))...)))))..... ( -54.80)
>DroYak_CAF1 36315 109 + 1
CUGGCACUGCUACUGGU---GGCCGUGAGUCUGGCCAGGAUUGCGGCCAGGCCAGGUGCACAGAAUCCGCUCGAAUCGCUGGGCAUGGGCGCCAUGGCGCUGGCCGGGAAUA
(((((..(((((.((((---(.(((((..(((((((.((.......)).)))))))..))).......(((((......)))))..)).))))))))))...)))))..... ( -51.60)
>DroAna_CAF1 48082 112 + 1
UUGAUUGUGAUACUGGUACUGACCACCAUCCCGGCGGGGAUCGUGGCCAAGCCGAGGGCCCAGAACCCCCUGGAGAACCUCGGCAUGACGGCCAUGAACCUGGCCGGGAACA
.............((((....))))...(((((((.(((.((((((((..(((((((..((((......))))....))))))).....)))))))).))).)))))))... ( -58.90)
>consensus
CUGGCACUGCUCCUGGU___GACCGUGAGUCUGGCCAGGAUUGCGGCCAGGCCAGGUCCACAGAAUCCGCUAGAGUCGCUGGGCAUGGGCGCCAUGACUCUGGCCGGAAAUA
(((((....(((.((((....)))).))).((((((........)))))))))))..........(((((((((.(((...(((......))).))).))))).)))).... (-32.20 = -32.48 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:56 2006