| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,257,947 – 18,258,063 |
| Length | 116 |
| Max. P | 0.778048 |
| Location | 18,257,947 – 18,258,063 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 95.44 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -22.84 |
| Energy contribution | -22.73 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18257947 116 - 22224390 UAUCAGUUCACAAAUGAUUCAACAAACU-UUGAAUGAUUGAGGUACUUUUCUCAUCUACUCGUAUAAUUCGCGUAUUAGAUGUUUAAAGUAUAAUAUUUAGUUUGUGAGCAAUUUAA .....((((((((((.((((((......-)))))).......(((((((...((((((..(((.......)))...))))))...)))))))........))))))))))....... ( -29.80) >DroSec_CAF1 31755 117 - 1 UAUCAGUUCGCAAAUGAUUCAACAAACUUUUGAAUGAUUGAGGUACUUUUCUCAUCUACUCGUAUAAUUCGCAUGUUUGAUGUUUCAAGUAUGAUAUUUAGUUUGUGAGCAAUUUAA .....((((((((((.((((((.......))))))(((.((((......)))))))........(((....(((((((((....)))))))))....)))))))))))))....... ( -25.10) >DroSim_CAF1 6295 117 - 1 UAUCAGUUCGCAAAUGAUUCAACAAACUUUUGAAUGAUUGAGGUACUUUUCUCAUCUACUCGUAUAAUUCGCAUGUUUGAUGUUUCAAGUAUGAUAUUUAGUUUGUGAGCAAUUCAA .....((((((((((.((((((.......))))))(((.((((......)))))))........(((....(((((((((....)))))))))....)))))))))))))....... ( -25.10) >consensus UAUCAGUUCGCAAAUGAUUCAACAAACUUUUGAAUGAUUGAGGUACUUUUCUCAUCUACUCGUAUAAUUCGCAUGUUUGAUGUUUCAAGUAUGAUAUUUAGUUUGUGAGCAAUUUAA .....((((((((((.((((((.......))))))(((.((((......)))))))...((((((.....((((.....)))).....))))))......))))))))))....... (-22.84 = -22.73 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:48 2006