Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,234,820 – 18,234,911 |
Length | 91 |
Max. P | 0.962128 |
Location | 18,234,820 – 18,234,911 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 70.12 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -9.61 |
Energy contribution | -9.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -3.02 |
Structure conservation index | 0.39 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18234820 91 + 22224390 GAUGCAUA--UACA------------UACAUACAAAUGUAUCUAUGUAUGUAUCUAUUAACGCUGAUAUAUUCGUUUGCUGGUGCAAAUAUGGGAGGAUUUUCCA ((((((((--((.(------------(((((....))))))...))))))))))...................((((((....))))))...((((....)))). ( -21.70) >DroSec_CAF1 8819 73 + 1 GAUACAUA--------------------C------AUGUAUCUAUGCAUU------UCAAAGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGUAUUUUCCA ((((((..--------------------.------.))))))..((((((------.....(((((.....))).))...))))))......((((....)))). ( -15.80) >DroEre_CAF1 7838 98 + 1 GAUGCAUAUAUGCAUG-AGAUGCAUAUACAUACAUAUGUAUCUCAGCAUU------UGUACGCCGAUAUAUUCAUGGGCUUUUGCAAAUAUGGGAGGAUUUUCCA ....(((((((((.((-((((((((((......))))))))))))))))(------((((.(((.((......)).)))...))))))))))((((....)))). ( -31.50) >DroYak_CAF1 9083 93 + 1 GAUACAUA--UGCAUCUAGAUACAUUU----GUAUAUGUAUCUAUGCAUU------UGUACGAUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCA ((((((((--((((............)----)))))))))))..(((((.------.((((.((((.....))))))))..)))))......((((....)))). ( -30.30) >consensus GAUACAUA__UGCA____________U_C__ACAUAUGUAUCUAUGCAUU______UGAACGCUGAUAUAUUCGUGUGCUGGUGCAAAUAUGGGAGGAUUUUCCA (((((((............................)))))))........................((((((....(((....)))))))))((((....)))). ( -9.61 = -9.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:45 2006