Locus 7314

Sequence ID X_DroMel_CAF1
Location 18,231,444 – 18,231,548
Length 104
Max. P 0.806969
window11976

overview

Window 6

Location 18,231,444 – 18,231,548
Length 104
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 86.36
Mean single sequence MFE -32.75
Consensus MFE -22.75
Energy contribution -22.12
Covariance contribution -0.63
Combinations/Pair 1.14
Mean z-score -2.07
Structure conservation index 0.69
SVM decision value 0.64
SVM RNA-class probability 0.806969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18231444 104 - 22224390
AAGUCGUUGAGUGCC-CUAUUAGCGCUUUUGCGCAAU------GGUUAGUGAUAGGUUUAUCAUUAUCGAUGGCCUGUUUGCCCGGGCGUUAACUGAACGUAUAGAAUAGA
....((((.((((((-(.....((((....))))...------(((....((((((((.(((......))))))))))).))).))))....))).))))........... ( -33.40)
>DroSec_CAF1 5474 105 - 1
AAGUCGUUGAGAGUCGUUAUUAGCGCUUUUGCGCAAU------GGUUAGUGAUAGGUUUAUCAUUACCGAUGGCCUGUUUGCCCAGGCGUUAACUGAACGUAUAGAAUGAA
....((((.((.(((.......((((....))))...------(((.(((((((....))))))))))))).(((((......))))).....)).))))........... ( -30.90)
>DroEre_CAF1 4667 110 - 1
AUAUCGCUGAGUGCC-CUAUUAGCGCUUUUGCGCAAUGCCCAUGCUUAGUGAUAAGUUUAUCAUUAUUGAUGGCCUGUUUGUCCGGGCGCUAACUGGACGUAUAGACCAGA
.(((((((((((...-.((((.((((....)))))))).....))))))))))).....((((....))))((.((((.(((((((.......))))))).)))).))... ( -39.10)
>DroYak_CAF1 5781 104 - 1
AAGUCGUUGAGUGUC-CUAUUAGCGCUUUUGCGCAAU------GGUUAGUGAUAAGUUUAUCAUUAUUGAUGGCCUGUUUGCCCGGGCGUUAACUGCAAGUAUUGAAUUGA
..((.(((((..(((-(((((.((((....)))))))------)).((((((((....))))))))..))).(((((......))))).))))).)).............. ( -27.60)
>consensus
AAGUCGUUGAGUGCC_CUAUUAGCGCUUUUGCGCAAU______GGUUAGUGAUAAGUUUAUCAUUAUCGAUGGCCUGUUUGCCCGGGCGUUAACUGAACGUAUAGAAUAGA
..((((................((((....))))............((((((((....)))))))).)))).(((((......)))))....................... (-22.75 = -22.12 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:44 2006