| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,229,175 – 18,229,273 |
| Length | 98 |
| Max. P | 0.811435 |
| Location | 18,229,175 – 18,229,273 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.85 |
| Mean single sequence MFE | -32.03 |
| Consensus MFE | -21.23 |
| Energy contribution | -20.98 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.811435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18229175 98 - 22224390 UGCACUG--UGUGCGAGAGAUGCUAAUGUGUACCGAUGACCUUUCGUCGUUCGGAAAACGUUGAUCGCAUCGCCUGGCGUUGUAAACAAAACACUG-GCAA (((...(--(((((.((.(((((((((((...((((((((.....)))).))))...))))))...)))))..)).)).(((....))).))))..-))). ( -32.70) >DroSec_CAF1 3092 99 - 1 UGCACUUUGAGUGCGAGAGAUGCUAAUGUGUACCGAUGACCUUUCGUCGUU-GGAAAACGUUGAUCGCAUCGCCAGGCGGUGUAAACAAAACACUG-GCAA .((((.....))))....(((((((((((...((((((((.....))))))-))...))))))...)))))(((((....((....)).....)))-)).. ( -36.60) >DroEre_CAF1 2737 98 - 1 UGCACUG--UGUGUGAGGGAUGCUAAUGUGUACCGAUGACCUUUCGUCGCA-GGAAAAUGUUGAUCGCAUCGCCUGGCGGUGUAAACAAAGCGCUGCCCAA ..(((..--...)))((((((((((((((...((..((((.....))))..-))...))))))...))))).)))((((((((.......))))))))... ( -31.40) >DroYak_CAF1 3902 87 - 1 ------------GUGAGAGAUGCUAAUGUGUACCGAUGACCUUUCGUCGUU-GGAAAAUGUUGAUCGCAUCGCCUGGCGGUGUAAACAAAAUACCA-GGAA ------------((.((.(((((((((((...((((((((.....))))))-))...))))))...)))))..)).))(((((.......))))).-.... ( -27.40) >consensus UGCACUG__UGUGCGAGAGAUGCUAAUGUGUACCGAUGACCUUUCGUCGUU_GGAAAACGUUGAUCGCAUCGCCUGGCGGUGUAAACAAAACACUG_GCAA ............((.((.(((((((((((...((((((((.....)))))).))...))))))...)))))..)).))(((((.......)))))...... (-21.23 = -20.98 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:43 2006