Locus 7312

Sequence ID X_DroMel_CAF1
Location 18,227,670 – 18,227,784
Length 114
Max. P 0.842556
window11974

overview

Window 4

Location 18,227,670 – 18,227,784
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.40
Mean single sequence MFE -27.52
Consensus MFE -8.90
Energy contribution -10.38
Covariance contribution 1.48
Combinations/Pair 1.11
Mean z-score -2.02
Structure conservation index 0.32
SVM decision value 0.76
SVM RNA-class probability 0.842556
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18227670 114 - 22224390
UCGGUGGGGAACAA---CAAAGAUGGGAGCAUGAAAAGUGAAUAGUUUUUCAACCAUGAUAAAUCGAGUACAUCGAAUGACCCAA--UUCUGUGCCAAAAAUGGAAAAUGGAAAA-CCCC
.....((((.....---......((((..((((.....((((......))))..)))).....((((.....))))....)))).--((((((.(((....)))...))))))..-)))) ( -26.90)
>DroSec_CAF1 1645 113 - 1
UCAGCGGGGAACAA---CAGAGAUGGGAGCAUGGAAAGUGCAUAGUUUUGCAACCAUGAUAAAUCGAAUACAUCGCGUUACCCAA--CUCUGCUCCAAAAAUG-AAAAUGGAAAA-CCCC
.....((((.....---(((((.((((..(((((....((((......)))).))))).(((..(((.....)))..))))))).--))))).((((......-....))))...-)))) ( -34.00)
>DroSim_CAF1 2347 113 - 1
UCAGCGGGGAACAA---CAGAGAUGGAAGCAUGGAAAGUGCAUAGUUUUGCAACCAUGAUAAAUCGAAUACAUCGCGUUACCCAA--CUCUGCGCCAAAAAUG-AAAAUGGAAAA-CCCC
.....((((.....---(((((.(((...(((((....((((......)))).))))).(((..(((.....)))..))).))).--)))))..(((......-....)))....-)))) ( -29.00)
>DroEre_CAF1 1579 95 - 1
UCGGCGAGGAGCAA---CGAAGAUGGGAGCAUGGAAAGUGCAUAGUUUUCCAGCCAUGAUAAAUCGA-AACAUCUACU--------------------GAAUG-GAAAUGGAAGGCCCCA
(((((.....))..---)))...((((.((((.....))))...((((((((.((((((....))..-....((....--------------------)))))-)...)))))))))))) ( -24.30)
>DroYak_CAF1 2393 119 - 1
GCAGCGAGCAACAACAACAACGAAGGGAGCAUGAAAAGUGCAUAGUUUUCCGAGCAUGAUAAAUCGAGAACAUCUAGUAUGCCAUGCAGCUAUACCAAAAAUG-AAAAUGGUAAAACCCC
((.....))...............(((.(((((....((((.(((..((((((..........))).)))...)))))))..))))).....(((((......-....)))))...))). ( -23.40)
>consensus
UCAGCGGGGAACAA___CAAAGAUGGGAGCAUGGAAAGUGCAUAGUUUUCCAACCAUGAUAAAUCGAAUACAUCGAGUUACCCAA__CUCUGCGCCAAAAAUG_AAAAUGGAAAA_CCCC
.....((((............(((.....(((((....((((......)))).)))))....)))((.....))..........................................)))) ( -8.90 = -10.38 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:42 2006