Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,221,813 – 18,221,918 |
Length | 105 |
Max. P | 0.968785 |
Location | 18,221,813 – 18,221,918 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.51 |
Mean single sequence MFE | -36.59 |
Consensus MFE | -28.93 |
Energy contribution | -29.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.79 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682744 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18221813 105 + 22224390 ---------------CACAUCUGGGUGGCUAUAAAAGCCACCAGCCGGCUCCGGAUUCUCCACAGUCGAGCUUCAACUGUUUCUCAGAUGAUGUCGCCGCAUAAGACCCACACCUGGCUG ---------------..(((((((((((((.....)))))))((((((((..((.....))..))))).)))............)))))).....((((...............)))).. ( -34.86) >DroSim_CAF1 1 105 + 1 ---------------CACAUCUGGGUGGCUAUAAAAGCCACCAGCCGGCUCCGGAUUCUCCACAGUCUUUCUUCAACUGUUUCUGAGAUGAUGUCGCCGCGCAAGACCCACACCUGGCUG ---------------........(((((((.....)))))))(((((((..((...((((.(((((.........)))))....))))...))..))).(....)..........)))). ( -33.90) >DroYak_CAF1 1 120 + 1 ACAUCUGGGUAUGUACAUAUCUGGGUGGCUAUAAAAGCCACCAGCCGGCUCCGGAUUCUCCACAGUCGAGCUUCAACUGUUCCUGAGAUGAUGUCGCCGCGUGAAACCCACACCUGGCUG ....(..(((((....)))))..)((((((.....))))))((((((((..((...((((.(((((.(.....).)))))....))))...))..)))..(((.....)))....))))) ( -41.00) >consensus _______________CACAUCUGGGUGGCUAUAAAAGCCACCAGCCGGCUCCGGAUUCUCCACAGUCGAGCUUCAACUGUUUCUGAGAUGAUGUCGCCGCGUAAGACCCACACCUGGCUG .......................(((((((.....)))))))(((((((..((...((((.(((((.(.....).)))))....))))...))..))).(....)..........)))). (-28.93 = -29.93 + 1.00)
Location | 18,221,813 – 18,221,918 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.51 |
Mean single sequence MFE | -41.87 |
Consensus MFE | -39.56 |
Energy contribution | -39.57 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.94 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18221813 105 - 22224390 CAGCCAGGUGUGGGUCUUAUGCGGCGACAUCAUCUGAGAAACAGUUGAAGCUCGACUGUGGAGAAUCCGGAGCCGGCUGGUGGCUUUUAUAGCCACCCAGAUGUG--------------- .((((.(((.((((((((.(((((((((.(((.(((.....))).))).).))).)))))))).)))))..)))))))(((((((.....)))))))........--------------- ( -40.70) >DroSim_CAF1 1 105 - 1 CAGCCAGGUGUGGGUCUUGCGCGGCGACAUCAUCUCAGAAACAGUUGAAGAAAGACUGUGGAGAAUCCGGAGCCGGCUGGUGGCUUUUAUAGCCACCCAGAUGUG--------------- .((((..(((..(...)..)))(((..(....((((....((((((.......)))))).))))....)..)))))))(((((((.....)))))))........--------------- ( -39.70) >DroYak_CAF1 1 120 - 1 CAGCCAGGUGUGGGUUUCACGCGGCGACAUCAUCUCAGGAACAGUUGAAGCUCGACUGUGGAGAAUCCGGAGCCGGCUGGUGGCUUUUAUAGCCACCCAGAUAUGUACAUACCCAGAUGU .((((..(((((.....)))))(((..(....((((....(((((((.....))))))).))))....)..)))))))(((((((.....))))))).........((((......)))) ( -45.20) >consensus CAGCCAGGUGUGGGUCUUACGCGGCGACAUCAUCUCAGAAACAGUUGAAGCUCGACUGUGGAGAAUCCGGAGCCGGCUGGUGGCUUUUAUAGCCACCCAGAUGUG_______________ .((((..(((((.....)))))(((..(....((((....(((((((.....))))))).))))....)..)))))))(((((((.....)))))))....................... (-39.56 = -39.57 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:41 2006