Locus 7310

Sequence ID X_DroMel_CAF1
Location 18,220,172 – 18,220,263
Length 91
Max. P 0.669989
window11971

overview

Window 1

Location 18,220,172 – 18,220,263
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 74.04
Mean single sequence MFE -27.80
Consensus MFE -11.36
Energy contribution -12.48
Covariance contribution 1.11
Combinations/Pair 1.25
Mean z-score -1.99
Structure conservation index 0.41
SVM decision value 0.29
SVM RNA-class probability 0.669989
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18220172 91 + 22224390
AGGCACGGCCUGCAUUUUAAGCAGUUC---GUCAAUUCUCUG--CUGGAUGUGGACA---GUUCUCCACAGCUCCUCUUCGUUGCUCU---UACUGCAACGA
.((((((..((((.......))))..)---)).........)--))(((((((((..---....))))))..)))...(((((((...---....))))))) ( -29.20)
>DroPse_CAF1 8523 91 + 1
AGGCACGGCCUGCAUUUUAAGCAGACC---GCAAAUU-UAAG--UUGC-UUUUCACAUGAGUU---GAGGGGAUGUCUCUG-UCUUCCCUUGAUUGCACUCA
..((..((.((((.......)))).))---((((...-....--))))-..........(((.---.((((((.(......-.)))))))..)))))..... ( -23.10)
>DroSec_CAF1 4748 91 + 1
AGGCACGGCCUGCAUUUUAAGCAGGUCGUCGUCAAUUCUCUG--CUGGAUCUGGACA---GUU--CCACAGCUCCUCUCCG-UGCUCU---UGCUGCAACAA
.((((((((((((.......))))))))).)))......(((--.((((.((....)---).)--))))))..........-(((...---....))).... ( -29.00)
>DroSim_CAF1 4926 91 + 1
AGGCACGGCCUGCAUUUUAAGCAGGUCGUCGUCAAUUCUCUG--CUGGAUCUGGACA---GUU--CCACAGCUCCUCUCCG-UGCUCC---UACUGCAACAA
.((((((((((((.......))))))))).)))......(((--.((((.((....)---).)--))))))..........-(((...---....))).... ( -29.00)
>DroEre_CAF1 4668 88 + 1
AGGCACGGCGUGCAUUUUAAGCAGGUC---GACAAUUCUCUG--GCGGCUCUGGACG---AUU--CCCAAGCUCCUCUCCG-UGCUCC---UACUGCACUGA
.((..((((.(((.......))).)))---)..........(--(.((((..(((..---..)--))..))))))...))(-(((...---....))))... ( -25.00)
>DroYak_CAF1 4648 79 + 1
AGGCACGGCCUGCAUUUUAAGCAGGUC---GACAAUUCUCUGUGCUGGAGCUGGACA---AUU--CCAAAGCUCCUC---------------ACUGCACCGA
..(((((((((((.......)))))))---)..........(((..(((((((((..---..)--))..)))))).)---------------)))))..... ( -31.50)
>consensus
AGGCACGGCCUGCAUUUUAAGCAGGUC___GUCAAUUCUCUG__CUGGAUCUGGACA___GUU__CCACAGCUCCUCUCCG_UGCUCC___UACUGCAACGA
..(((.(((((((.......)))))))...................(((.(((...............))).)))...................)))..... (-11.36 = -12.48 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:39 2006