| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,216,631 – 18,216,750 |
| Length | 119 |
| Max. P | 0.762115 |
| Location | 18,216,631 – 18,216,750 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.53 |
| Mean single sequence MFE | -46.05 |
| Consensus MFE | -32.46 |
| Energy contribution | -32.13 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.762115 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18216631 119 + 22224390 AGUUGGGUGACCUUGUUGAGCUUGCUGUUCGGCGAGGCCACGUCGCUCAGCUGGGCGUUCUUGCUGCCGGCCAACGCCUGGUUCAGACUGGAUUCGAACACAUUCUCGCCCAGCUGAUU (((((((((((((((((((((.....)))))))))))(((.(((....(((..((((((...((.....)).))))))..)))..))))))..............)))))))))).... ( -53.90) >DroVir_CAF1 1340 119 + 1 AGCUGGGUGACCUUGUUAAGCUUGCUGUUGGGCGAGGACAUGUCGCUGAGCUGGGCGGUCUUGGUGCCAGCCAAUGCCUGAUUCAAGCUGGAUUCGAAAACAUUUUCGCCUAGCUGAUU ((((((((((...((((.((((((..((..((((.((...((.(((..((((....)).))..))).)).))..))))..)).)))))).........))))...)))))))))).... ( -46.10) >DroGri_CAF1 1288 119 + 1 AGCUGGGUAACCUUAUUCAGUUUGUUAUUGGGCGACGACAUAUCGCUGAGCUGGGCGGUCUUGCUGCCAGCCAAUGCUUGAUUCAAACUCGACUCGAAUACAUUCUCGCCUAGCUGAUU ((((((((........((((((((..((..((((.(((....))).((.(((((.(((.....)))))))))).))))..)).)))))).))...(((....)))..)))))))).... ( -38.90) >DroWil_CAF1 1152 119 + 1 AAUUGGGUGACCUUGUUCAAUUUGUUGUUGGGCGAGGCAAUGUCACUAAGUUGGGCAGUUUUACUGCCAGCCAAAGCCUGAUUCAAGCUGGAUUCGAAAACAUUUUCGCCCAGUUGAUU (((..((((.(((((((((((.....))))))))))))...........(((((.(((.....))))))))....)))..)))..((((((...(((((....))))).)))))).... ( -39.60) >DroMoj_CAF1 1223 119 + 1 AGCUGGGUGACCUUGUUAAGCUUGUUGUUGGGCGAGGACAUGUCGCUGAUUUGGGCUGUCUUGGUGCCGGCCAAUGCCUGAUUCAAGCUGGAUUCGAAUACGUUCUCGCCCAACUGAUU ((((((....))......))))....(((((((((((((.....(((((.(..(((....(((((....))))).)))..).)).))).(..........))))))))))))))..... ( -45.60) >DroAna_CAF1 985 119 + 1 AGCUGGGUGACCUUGUUGAGCUUGUUAUUCGGCGAGGAGAUGUCGCUCAUCUGGGCAUUCUUGGUCCCGGCCAGGGCCUGGUUCAGACUCGACUCGAACACAUUCUCGCCCAGCUGAUU ((((((((((((((((((((.......)))))))))).((.((((....(((((((..(((((((....)))))))....)))))))..))))))..........)))))))))).... ( -52.20) >consensus AGCUGGGUGACCUUGUUAAGCUUGUUGUUGGGCGAGGACAUGUCGCUGAGCUGGGCGGUCUUGCUGCCAGCCAAUGCCUGAUUCAAACUGGAUUCGAAAACAUUCUCGCCCAGCUGAUU (((((((((((((((((((((.....))))))))))).....((((...(((((............)))))....))..((.((......)).))))........)))))))))).... (-32.46 = -32.13 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:39 2006