Locus 7308

Sequence ID X_DroMel_CAF1
Location 18,214,444 – 18,214,545
Length 101
Max. P 0.515861
window11969

overview

Window 9

Location 18,214,444 – 18,214,545
Length 101
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -48.28
Consensus MFE -34.76
Energy contribution -35.27
Covariance contribution 0.51
Combinations/Pair 1.29
Mean z-score -1.18
Structure conservation index 0.72
SVM decision value -0.03
SVM RNA-class probability 0.515861
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18214444 101 - 22224390
CGGCGGAAGAGGUCGAC------------GGCUUCUCGCUGGCAGCGGCCGAGGAGUGGGCGGGUGUCAUCGCUGGCUUCUCGGCAUUAACAAAGCGCUCCAUGCGCGCCUGC
(((((..((((((....------------.)))))))))))(((((.((((((((((.(((((......))))).)))))))))).........((((.....))))).)))) ( -53.20)
>DroSec_CAF1 339 101 - 1
CGGCAGAAGAGGUCGAC------------GGCUUCUCGCUGGCAGCGGCCGAGGAGUGGGCGGGCGUCAUCGCUGGCUUCUCGGCAUUGACGAAGCGCUCCAUGCGCGCCUGC
((((.((.(((((....------------.)))))))))))(((((.((((((((((.(((((......))))).)))))))))).........((((.....))))).)))) ( -51.30)
>DroSim_CAF1 341 101 - 1
CGGCGGAAGAGGUCGAC------------GGCUUCUCGCUGGCAGCGGCCGAGGAGUGGGCGGGCGUCAUCGCUGGCUUCUCGGCAUUGACGAAGCGCUCCAUGCGCGCCUGC
(((((..((((((....------------.)))))))))))(((((.((((((((((.(((((......))))).)))))))))).........((((.....))))).)))) ( -53.20)
>DroEre_CAF1 327 101 - 1
CGGCGUUUGAAGUCGAU------------GGCUUCUCGCUGGCAACGGCGGAGGAGUGGGCGGGCGUCAUCGCUGGCUUCUCGGCAUUGACGAAGCGCUCCAUGCGCGCCUGC
.(((.......((((((------------(.(....(((((....)))))(((((((.(((((......))))).)))))))).)))))))...((((.....)))))))... ( -53.40)
>DroYak_CAF1 339 101 - 1
CGGCGGAUGAAGUCGAU------------GCCUUCUCUCUGGCAGCGGCGGAUGAGUGGGCGGGCGUCAUCGCUGGCUUCUCGGCAUUGACGAAGCGCUCCAUACGCGCCUGC
..((((.....((((((------------(((.....((((.(...).)))).(((.((((.((((....)))).))))))))))))))))...((((.......)))))))) ( -42.60)
>DroPer_CAF1 321 110 - 1
CUGCCGAAGUGCUGGGCGCUGGUAGGAUGGGCUGCUCG---ACUGGGCUGGACUUGUGGGCAGGUGUUGUGGUGGGCUUCUCGGAAUUCACGAACCGUUCCAUGCGGGCUUGC
(((((..(((((...)))))))))).....((.(((((---..(((..((((((((....))))).((((((....((....))...)))))).)))..)))..)))))..)) ( -36.00)
>consensus
CGGCGGAAGAGGUCGAC____________GGCUUCUCGCUGGCAGCGGCCGAGGAGUGGGCGGGCGUCAUCGCUGGCUUCUCGGCAUUGACGAAGCGCUCCAUGCGCGCCUGC
((((.......))))...............(((((((((((....)))).)))))))..((((((((((..(((((....)))))..))))...((((.....)))))))))) (-34.76 = -35.27 +   0.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:37 2006