Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,205,497 – 18,205,596 |
Length | 99 |
Max. P | 0.871690 |
Location | 18,205,497 – 18,205,596 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 92.13 |
Mean single sequence MFE | -16.62 |
Consensus MFE | -14.11 |
Energy contribution | -13.95 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18205497 99 - 22224390 GGCAACAAAA---AAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU ((((((....---....((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70) >DroSec_CAF1 65637 100 - 1 GGCAACAAAAA--AAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU ((((((.....--....((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70) >DroSim_CAF1 64870 102 - 1 GGCAACAAAAAAAAAAACAGAAAAACAC-----ACAGCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU ((((((...........((((((.....-----...((.....))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -17.70) >DroEre_CAF1 59719 105 - 1 GGCAACAAAAA--AAAACAGAAAAACAC-----ACACCACACAGCAAAAAAAAACAGUCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCCUUUGUU ((((((.....--....((((((.....-----.................................)))))).((....))........))))))(((....)))....... ( -13.76) >DroYak_CAF1 59503 107 - 1 AGCAACAAAAAGAAAAACAGAAAAGCACACCACACUCCACACAGCGAAAAAA-----UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU ((((((...........((((((.((.................))((.....-----)).......)))))).((....))........))))))(((....)))....... ( -16.23) >consensus GGCAACAAAAA__AAAACAGAAAAACAC_____ACAGCACACAGCGAAAAAA_____UCAACUUACUUUCUGAUGACAUCACUAAAAACGUUGCUGCUGAGAGGCUUUUGUU ((((((...........((((((...........................................)))))).((....))........))))))(((....)))....... (-14.11 = -13.95 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:33 2006