Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,204,839 – 18,204,934 |
Length | 95 |
Max. P | 0.996109 |
Location | 18,204,839 – 18,204,934 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -21.48 |
Energy contribution | -21.08 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.30 |
Mean z-score | -2.27 |
Structure conservation index | 0.89 |
SVM decision value | 2.53 |
SVM RNA-class probability | 0.994947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18204839 95 + 22224390 UCUGUGAAACAGCCGAUGUGUGACAUCGAUAUCAAGCAAAACAUCGAAACACAUCGCCCCAAAACAUCGCUGUUGGAUGCAUCGAUGUUA-UUUUA .(((.....))).((((((((....(((((............))))).))))))))......(((((((.(((.....))).))))))).-..... ( -24.80) >DroSec_CAF1 64956 95 + 1 UCUGUGAAACGACCGAUGUGUGACAUCGAUAUCAAGCAAAACAUCGAAACACAGAGCCCCAAAACAUCGCUGCUGGAUGCAUCGAUGUUA-UUUUA ((((((...(((.(((((.....))))).......(.....).)))...)))))).......(((((((.(((.....))).))))))).-..... ( -25.20) >DroSim_CAF1 64197 95 + 1 UCUGUGAAACGACCGAUGUGUGACAUCGAUAUCAAGCAAAACAUCGAAACACAGAGCCCCAAAACAUCGCUGCUGGAUGCAUCGAUGUUA-UUUUA ((((((...(((.(((((.....))))).......(.....).)))...)))))).......(((((((.(((.....))).))))))).-..... ( -25.20) >DroEre_CAF1 59054 96 + 1 UCAAUGAAACAGCCGAUAUGUGGCAUCGAUAUUAAGCAAAACAUCGAAAUAUAUCGCCCUAAAACAUCGCUGCCGGAUGCAUCGAUGUUUUUUUUA .............((((((((....(((((.((......)).))))).))))))))....(((((((((.(((.....))).)))))))))..... ( -22.70) >DroYak_CAF1 58829 95 + 1 UCAAUUAAACUGCCGAUGUGUGUAAUCGAUAUCAAGCAAAACAUCGAAACAUAUCGCCCAAGGGCAUUGCUGCUGAAUGCAUCGAUGUUU-UUUUA .............((((((((....(((((............))))).))))))))...((((((((((.(((.....))).))))))))-))... ( -23.20) >consensus UCUGUGAAACAGCCGAUGUGUGACAUCGAUAUCAAGCAAAACAUCGAAACACAUCGCCCCAAAACAUCGCUGCUGGAUGCAUCGAUGUUA_UUUUA .............((((((((....(((((............))))).))))))))......(((((((.(((.....))).)))))))....... (-21.48 = -21.08 + -0.40)
Location | 18,204,839 – 18,204,934 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -27.54 |
Consensus MFE | -24.44 |
Energy contribution | -25.84 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.14 |
Mean z-score | -2.32 |
Structure conservation index | 0.89 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18204839 95 - 22224390 UAAAA-UAACAUCGAUGCAUCCAACAGCGAUGUUUUGGGGCGAUGUGUUUCGAUGUUUUGCUUGAUAUCGAUGUCACACAUCGGCUGUUUCACAGA .....-.(((((((.((.......)).)))))))...((.((((((((.((((((((......))))))))....)))))))).)).......... ( -29.80) >DroSec_CAF1 64956 95 - 1 UAAAA-UAACAUCGAUGCAUCCAGCAGCGAUGUUUUGGGGCUCUGUGUUUCGAUGUUUUGCUUGAUAUCGAUGUCACACAUCGGUCGUUUCACAGA .....-.(((((((.(((.....))).)))))))....((((.(((((.((((((((......))))))))....)))))..)))).......... ( -27.60) >DroSim_CAF1 64197 95 - 1 UAAAA-UAACAUCGAUGCAUCCAGCAGCGAUGUUUUGGGGCUCUGUGUUUCGAUGUUUUGCUUGAUAUCGAUGUCACACAUCGGUCGUUUCACAGA .....-.(((((((.(((.....))).)))))))....((((.(((((.((((((((......))))))))....)))))..)))).......... ( -27.60) >DroEre_CAF1 59054 96 - 1 UAAAAAAAACAUCGAUGCAUCCGGCAGCGAUGUUUUAGGGCGAUAUAUUUCGAUGUUUUGCUUAAUAUCGAUGCCACAUAUCGGCUGUUUCAUUGA .....(((((((((.(((.....))).))))))))).((.((((((...((((((((......))))))))......)))))).)).......... ( -29.00) >DroYak_CAF1 58829 95 - 1 UAAAA-AAACAUCGAUGCAUUCAGCAGCAAUGCCCUUGGGCGAUAUGUUUCGAUGUUUUGCUUGAUAUCGAUUACACACAUCGGCAGUUUAAUUGA ....(-(((((((((.((((((...(....)(((....))))).)))).))))))))))........(((((((.((.........)).))))))) ( -23.70) >consensus UAAAA_UAACAUCGAUGCAUCCAGCAGCGAUGUUUUGGGGCGAUGUGUUUCGAUGUUUUGCUUGAUAUCGAUGUCACACAUCGGCCGUUUCACAGA .......(((((((.(((.....))).)))))))...((.((((((((.((((((((......))))))))....)))))))).)).......... (-24.44 = -25.84 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:32 2006