| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,190,337 – 18,190,433 |
| Length | 96 |
| Max. P | 0.837337 |
| Location | 18,190,337 – 18,190,433 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 91.88 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.75 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18190337 96 + 22224390 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGAAAGCUAUGUGCAAAAA (((((((.....(((((..((((((((.(((((.((....))....)))))..))).-)))))...)).)))....(((....)))))))))).... ( -34.60) >DroSec_CAF1 52746 96 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGAAAGCAGUCUUGAAAAA .((((....))))((((..((((((((.(((((.((....))....)))))..))).-)))))((((........))))....)))).......... ( -29.70) >DroSim_CAF1 51182 96 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA-GCUGCACUGCAAGAAAUCAGUGGAAGCAGUCUUAAAAAA .((((....))))((((..((((((((.(((((.((....))....)))))..))).-)))))((((........))))....)))).......... ( -29.70) >DroYak_CAF1 46589 94 + 1 UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCACGGUGCACUGCAAAAAACCCGUGAAUG---UUUUGAAAAA ..((((.(((..((((((......))))))..).((((..((....))(((((....))).)).)))).....)).))))....---.......... ( -27.80) >consensus UGUACGUGUGUAUCUGCCAGCAGCGGCAGACGCAGCAGCAGCAACAGCGUCCGGCCA_GCUGCACUGCAAGAAAUCAGUGAAAGCAGUCUUGAAAAA ..(((...((..((((((......))))))..))((((((((....((.....))...)))))..))).........)))................. (-24.50 = -24.75 + 0.25)
| Location | 18,190,337 – 18,190,433 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 91.88 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -27.77 |
| Energy contribution | -28.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18190337 96 - 22224390 UUUUUGCACAUAGCUUUCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..(((((.((........((((........))))(((((-.(((.((((((....((....)).)))))))))))))))))))))............ ( -33.00) >DroSec_CAF1 52746 96 - 1 UUUUUCAAGACUGCUUUCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........(((((...((((........))))(((((-.(((.((((((....((....)).)))))))))))))).)))))............. ( -34.60) >DroSim_CAF1 51182 96 - 1 UUUUUUAAGACUGCUUCCACUGAUUUCUUGCAGUGCAGC-UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........(((((...((((........))))(((((-.(((.((((((....((....)).)))))))))))))).)))))............. ( -34.60) >DroYak_CAF1 46589 94 - 1 UUUUUCAAAA---CAUUCACGGGUUUUUUGCAGUGCACCGUGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA ..........---.....(((.((..(((((...(((..(((((.((((((....((....)).))))))))))))))..))))).))...)))... ( -31.80) >consensus UUUUUCAAGACUGCUUUCACUGAUUUCUUGCAGUGCAGC_UGGCCGGACGCUGUUGCUGCUGCUGCGUCUGCCGCUGCUGGCAGAUACACACGUACA .............................((((((((((..(((.....)))...))))).)))))((((((((....))))))))........... (-27.77 = -28.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006