Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 319,349 – 319,493 |
Length | 144 |
Max. P | 0.789227 |
Location | 319,349 – 319,453 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -21.72 |
Consensus MFE | -20.38 |
Energy contribution | -20.42 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.20 |
Structure conservation index | 0.94 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 319349 104 - 22224390 ACAGCAAAGGUAUAUAAGCUUCGGCUGGCCGAAGUUAUCCUCCUUUCUCGGCUUAAAUUGAUAUUUACACAAUGACUCAGUCAUGGCUUGAUUAAAA-AAAACUU ..((((((((......((((((((....)))))))).....)))))...((((...((((.........)))).....))))...))).........-....... ( -20.80) >DroSec_CAF1 62304 104 - 1 ACAGCAAAGGUAUAUAAGCUUCGGCUGGCCGAAGUUAUCUUCCUUUAUCGGCUUAAAUUGAUAUUUACACAAUGACUCAGUCACGGCUUGAUUAAAA-AAAACUU ..((((((((......((((((((....)))))))).....)))))...((((...((((.........)))).....))))...))).........-....... ( -21.40) >DroSim_CAF1 82949 104 - 1 ACAGCAAAGGUAUAUAAGCUUCGGCUGGCCGAAGUUAUCUUCCUUUAUCGGCUUAAAUUGAUAUUUACACAAUGACUCAGUCACGGCUUGAUUAAAA-AAAACUU ..((((((((......((((((((....)))))))).....)))))...((((...((((.........)))).....))))...))).........-....... ( -21.40) >DroEre_CAF1 62927 105 - 1 ACAGCAAAGGUACAUAAACUUCGGCUGGCCGCAGUUAUCUUCCUUUCUCGGCUUAAAUUGCUAUUUACACAAUGACUCAGUCACGGCUUGAUUAAAAAAAAACUU .((((..((((......))))..))))(((((((((.....((......))....))))))...........((((...)))).))).................. ( -21.00) >DroYak_CAF1 83716 104 - 1 ACAGCAAAGGUAUAUAAGCUUCGGCUGGCCGAAGUUAUCUUCCUUUCUCGGCUUAAAUUGCUAUUUACACAAUGACUCAGUCACGGCUUGGUUAAAA-AAAACUU ..((.(((((......((((((((....)))))))).....))))))).(((.......)))..........(((((.(((....))).)))))...-....... ( -24.00) >consensus ACAGCAAAGGUAUAUAAGCUUCGGCUGGCCGAAGUUAUCUUCCUUUCUCGGCUUAAAUUGAUAUUUACACAAUGACUCAGUCACGGCUUGAUUAAAA_AAAACUU .(((((((((......((((((((....)))))))).....)))))...((((...((((.........)))).....))))...)).))............... (-20.38 = -20.42 + 0.04)
Location | 319,373 – 319,493 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.50 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -23.54 |
Energy contribution | -24.18 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.85 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 319373 120 + 22224390 CUGAGUCAUUGUGUAAAUAUCAAUUUAAGCCGAGAAAGGAGGAUAACUUCGGCCAGCCGAAGCUUAUAUACCUUUGCUGUUAAAACCAUGUAUUUAAUAUGAAAGUUCGCACAAUUUCGA .((((..((((((..(((.........(((....(((((...((((((((((....)))))).))))...))))))))........(((((.....)))))...)))..)))))))))). ( -28.10) >DroSec_CAF1 62328 120 + 1 CUGAGUCAUUGUGUAAAUAUCAAUUUAAGCCGAUAAAGGAAGAUAACUUCGGCCAGCCGAAGCUUAUAUACCUUUGCUGUUAAAACCAUGUAUUUAAUAUGAAAGUUCGCACACUUUCGA .((((....((((..(((.........(((.(.((((((...((((((((((....)))))).))))...))))))).))).....(((((.....)))))...)))..))))..)))). ( -27.20) >DroSim_CAF1 82973 120 + 1 CUGAGUCAUUGUGUAAAUAUCAAUUUAAGCCGAUAAAGGAAGAUAACUUCGGCCAGCCGAAGCUUAUAUACCUUUGCUGUUAAAACCAUGUAUUUAAUAUGAAAGUUCGCACAAUUUCGA .((((..((((((..(((.........(((.(.((((((...((((((((((....)))))).))))...))))))).))).....(((((.....)))))...)))..)))))))))). ( -29.10) >DroEre_CAF1 62952 120 + 1 CUGAGUCAUUGUGUAAAUAGCAAUUUAAGCCGAGAAAGGAAGAUAACUGCGGCCAGCCGAAGUUUAUGUACCUUUGCUGUUAAAACCAUGUCUUUAAUAUGAAAGGUCGCACAAUUUCGA .((((..(((((((.((((((((.............(((.(.((((((.(((....))).)).)))).).)))))))))))...(((...((........))..))).))))))))))). ( -26.11) >DroYak_CAF1 83740 120 + 1 CUGAGUCAUUGUGUAAAUAGCAAUUUAAGCCGAGAAAGGAAGAUAACUUCGGCCAGCCGAAGCUUAUAUACCUUUGCUGUUAAAACCAUGUCUUUAAUAUGAAAGGUCACACACUUUGGA .....(((..((((.((((((((......((......))...((((((((((....)))))).))))......))))))))...(((...((........))..)))...))))..))). ( -28.30) >consensus CUGAGUCAUUGUGUAAAUAUCAAUUUAAGCCGAGAAAGGAAGAUAACUUCGGCCAGCCGAAGCUUAUAUACCUUUGCUGUUAAAACCAUGUAUUUAAUAUGAAAGUUCGCACAAUUUCGA .((((..(((((((.............(((....(((((...((((((((((....)))))).))))...))))))))........(((((.....))))).......))))))))))). (-23.54 = -24.18 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:10 2006