| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,187,655 – 18,187,750 |
| Length | 95 |
| Max. P | 0.848205 |
| Location | 18,187,655 – 18,187,750 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -17.65 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18187655 95 + 22224390 AAACCACAUCCUGGUUUUCCCCGUCACGCCUUAAGUUACCUUUUGCAUGGAGCUUUGGGCAAUUCCACUGCACUAUUUAUCCUCCCAGGUAUUUC .........(((((........(...)((((.(((((.((........))))))).))))........................)))))...... ( -17.60) >DroSec_CAF1 50063 90 + 1 AAA---UUUCCUGGUUUUCCUC-UCACGCCUCAAGGAUCCUUAUGCAUGGGUCUUUGGGCCAUUCCACUGGACUGCCUGUCUU-CCAGGUAUUUC ...---...(((((........-....(((.(((((((((........)))))))))))).........((((.....)))).-)))))...... ( -28.50) >DroSim_CAF1 48503 90 + 1 AAA---UUUCGUGGUUUUCCUC-UCACGCCGCAAGGAACCUUAUGCACGGGUCUUUGGGCCAUUCCACUGGACUGCCUGUCUU-CCAGGUAUUUC ...---....((((........-....(((.((((((.(((.......))))))))))))....)))).(((.((((((....-.)))))).))) ( -23.59) >consensus AAA___UUUCCUGGUUUUCCUC_UCACGCCUCAAGGAACCUUAUGCAUGGGUCUUUGGGCCAUUCCACUGGACUGCCUGUCUU_CCAGGUAUUUC .........(((((.............(((.((((((.((........)).))))))))).........((((.....))))..)))))...... (-17.65 = -18.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:24 2006