| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,185,976 – 18,186,072 |
| Length | 96 |
| Max. P | 0.698620 |
| Location | 18,185,976 – 18,186,072 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 76.73 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -13.63 |
| Energy contribution | -13.07 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18185976 96 - 22224390 AAAACUUUCU-GUUCAUCACCUUGAGUGCAUUUAAAUCUC---AA--------ACUCGAUUAGCUGCCAAGUGGCUCGCUGCAGUCAUCAUACCAUACUUACAGGGUA ......((((-((.........(((.(((.....((((..---..--------....))))(((.(((....)))..)))))).))).............)))))).. ( -18.65) >DroSec_CAF1 48390 94 - 1 AAAACUUCCU-GAUCAUAAACUUGAGUGGAUUGAAAUCUC---AA--------ACUCGUUUAGCUGCCAAGCGCUUCGCUGCAGCCAUCAUACCUU--CUCCAGGGUA ......((((-(....(((((..((((((((....)))).---..--------)))))))))(((((..((((...)))))))))...........--...))))).. ( -22.90) >DroSim_CAF1 46849 94 - 1 AAAACUUCCU-GAUCAUCCACUUGAGUGGAUUGAAAUCUC---AA--------ACUUCUUUAGCUGCCAAGCGCUUCGCUGCAGCCAUCAUACCUU--UUCCAGGGUA ......((((-(.((((((((....))))).)))......---..--------.........(((((..((((...)))))))))...........--...))))).. ( -25.50) >DroEre_CAF1 42208 105 - 1 -AAGCUUUCUGCAGGAUCCCCUUAAGCGGAUUCAAAUCUAUUCAAUCUCUUUGACUCAAUUAGCUGGCAAGCGUUGCGCUGCAGCUGUCAUACCCU--UUCCAGGGUA -..((.....)).((((((.(....).))))))........((((.....))))......((((((.((.(((...)))))))))))...((((((--....)))))) ( -27.50) >consensus AAAACUUCCU_GAUCAUCAACUUGAGUGGAUUGAAAUCUC___AA________ACUCGAUUAGCUGCCAAGCGCUUCGCUGCAGCCAUCAUACCUU__UUCCAGGGUA ...((((................))))...................................(((((..((((...))))))))).....((((((......)))))) (-13.63 = -13.07 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:24 2006