| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,182,606 – 18,182,701 |
| Length | 95 |
| Max. P | 0.544206 |
| Location | 18,182,606 – 18,182,701 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 88.51 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -16.64 |
| Energy contribution | -17.13 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18182606 95 + 22224390 CAGUUG-GGUAUAAAUGCCGAAUAAUCUGCUGCAUUUCGAAAGCGGCCAG--AGUCUGGGCAAACUAAUUUGACAUGCAGUUUGUAAAAUGCAUUAAA ..((..-(((.....((((.(....((((((((.........)))).)))--)...).)))).....)))..))(((((..........))))).... ( -23.20) >DroSec_CAF1 45147 97 + 1 CAGUGG-GGUAAAAAUGCCGAAUAAACUGCUGCAUUUCGAAAGCGGCCAGAGAGCCUAGCGAAACUAAACUGACAUGCAGUUUGUAAAAUGCAUUAAA .((((.-((((....))))..((((((((((((((((((.....(((......)))...)))))......)).)).)))))))))......))))... ( -22.60) >DroSim_CAF1 43554 98 + 1 CAGUGCCGGUAUAAAUGCCGAAUAAACUGCUGCAUUUCGAAAGCGGCCAGAGAGCCUGGCGAAACUAAUUUGACAUGCAGUUUGUAAAAUGCAUUAAA .((((((((((....))))).(((((((((((((...(....)..(((((.....)))))..........)).)).))))))))).....)))))... ( -30.40) >DroYak_CAF1 39135 94 + 1 CAGUGG-GCCAUAAAUGCCGAAUAACCUGCUGCAUUUUGAAAGGCGCCC---AGCCUCGGGAAACUAAUUUGACAUGCAGUUUGUAAAAUGCAUUAAA .(((((-((.......))).....((..(((((((.(..((((((....---.)))).((....))..))..).)))))))..))......))))... ( -25.40) >consensus CAGUGG_GGUAUAAAUGCCGAAUAAACUGCUGCAUUUCGAAAGCGGCCAG__AGCCUGGCGAAACUAAUUUGACAUGCAGUUUGUAAAAUGCAUUAAA .............(((((..........(((((((.(((((...(((......)))(((.....))).))))).))))))).........)))))... (-16.64 = -17.13 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:23 2006