Locus 7296

Sequence ID X_DroMel_CAF1
Location 18,173,735 – 18,173,834
Length 99
Max. P 0.986168
window11951

overview

Window 1

Location 18,173,735 – 18,173,834
Length 99
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 93.69
Mean single sequence MFE -22.24
Consensus MFE -20.20
Energy contribution -19.64
Covariance contribution -0.56
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 2.03
SVM RNA-class probability 0.986168
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18173735 99 - 22224390
AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA
........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50)
>DroSec_CAF1 36605 99 - 1
AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA
........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50)
>DroSim_CAF1 35488 99 - 1
AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA
........((((((..(((..((......((.......))(((((((..(((((......------)))))...)))))))......))..)))..))))))... ( -23.50)
>DroEre_CAF1 30703 99 - 1
AUAAUGUCCGACAAUAGUUUCACAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA------UGCGCAAAGUAUUUCUCGCUGGUAUAACUUUUGUCGCAA
........((((((.((((.......(((((.......)))))((((.(((((......(------(((.....))))...))))).)))))))).))))))... ( -21.00)
>DroYak_CAF1 33299 105 - 1
AUAAUGUCCGACAAUCGUUUCACAUUUUUGUUUUAAUUACGAAAUGCAGGCGAGCAAACACCAGCACUCGCAAAGUAUUUUUCGUUGCUAUAACUUUUGUCGCAA
........((((((..(((..(((....))).......(((((((((..(((((............)))))...))))..)))))......)))..))))))... ( -19.70)
>consensus
AUAAUGUCCGACAAUCGUUUCGCAUUUUUGUUUUAAUUACGAAAUGCAGGCGAACAAACA______UUCGCAAAGUAUUUCUCGUUGGCAUAACUUUUGUCGCAA
........((((((..(((..((......((.......))(((((((..(((((............)))))...)))))))......))..)))..))))))... (-20.20 = -19.64 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:22 2006