Locus 7294

Sequence ID X_DroMel_CAF1
Location 18,167,886 – 18,167,989
Length 103
Max. P 0.666364
window11948

overview

Window 8

Location 18,167,886 – 18,167,989
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 87.38
Mean single sequence MFE -31.78
Consensus MFE -30.39
Energy contribution -30.07
Covariance contribution -0.31
Combinations/Pair 1.08
Mean z-score -1.31
Structure conservation index 0.96
SVM decision value 0.28
SVM RNA-class probability 0.666364
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18167886 103 - 22224390
CAUACUGUACGAAGUUAAAGUGGCACCGCUGCAACCACAACGUAUUUUCGAAUGAGGCAAUGUGGGGUAACCAGGUGUGCCCACUUCCGUUGCCAGGUGCAAC
..((((............))))(((((...(((((.....((......))..((.((((((.(((.....))).)).)))))).....)))))..)))))... ( -29.10)
>DroSec_CAF1 30033 103 - 1
CAUACUGUACGAAGUUAAAGUGGCACCGCUGCAACCACAACGUAUUUUCGAAUGAGACGAUGUGGGGUAACCAGGUGUGCUCACUUCCGUUGCCAGGUGCAAC
..((((............))))(((((.......(((((.(((.(((......)))))).)))))((((((.(((((....)))))..)))))).)))))... ( -31.60)
>DroSim_CAF1 30131 103 - 1
CAUACUGUACGAAGUUAAAGUGGCACCGCUGCAACCACAACGUAUUUUCGAAUGAGGCGAUGUGGGGUAACCAGGUGUGCUCACUUCCGUUGCCAGGUGCAAC
..((((............))))(((((.......(((((.(((.((.......)).))).)))))((((((.(((((....)))))..)))))).)))))... ( -31.60)
>DroYak_CAF1 27599 86 - 1
-----------------CAGUUGCACCGGUGCAACCACAACGUAAUUUCGAAUGUGGCGAUGUGGGGUAACCAGGUGUGUUCACUUCCGUUGCCAGGUGCAAC
-----------------..((((((((.......(((((.(((.((.......)).))).)))))((((((.(((((....)))))..)))))).)))))))) ( -34.80)
>consensus
CAUACUGUACGAAGUUAAAGUGGCACCGCUGCAACCACAACGUAUUUUCGAAUGAGGCGAUGUGGGGUAACCAGGUGUGCUCACUUCCGUUGCCAGGUGCAAC
......................(((((.......(((((.(((.((.......)).))).)))))((((((.(((((....)))))..)))))).)))))... (-30.39 = -30.07 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:19 2006