Locus 7293

Sequence ID	X_DroMel_CAF1
Location	18,166,126 – 18,166,221
Length	95
Max. P	0.657484

overview

Window 6

Location	18,166,126 – 18,166,221
Length	95
Sequences	3
Columns	95
Reading direction	forward
Mean pairwise identity	89.93
Mean single sequence MFE	-27.17
Consensus MFE	-19.30
Energy contribution	-20.63
Covariance contribution	1.33
Combinations/Pair	1.00
Mean z-score	-2.62
Structure conservation index	0.71
SVM decision value	0.18
SVM RNA-class probability	0.619931
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18166126 95 + 22224390
CGUCCUGCCUGGUGACCAGGCACCACCAGCCGUUCAUAUUAUGUAUUGUGGCACCACCCAUGCCCAACCCAGUUGGACAGUUAAUAGGACCACGU
.(((((((((((...))))))......(((.(((((.....((..(((.((((.......)))))))..))..))))).)))...)))))..... ( -31.10)
>DroSec_CAF1 28339 88 + 1
--UCCUGCCUGGUGACC-----CCACCAACCGUCCAUAUUAUGUAUUGUGGCACCACCCAUGCCCAACCCAAUUGUGGCGUUAAUAGGACCACGU
--(((((..(((((...-----.)))))..((.(((((...((..(((.((((.......)))))))..))..)))))))....)))))...... ( -25.20)
>DroSim_CAF1 28425 88 + 1
--UCCUGCCUGGUGACC-----CCACCAACCGUCCAUAUUAUGUAUUGUGGCACCACCCAUGCCCAACCCAAUUGUGGCGUUAAUAGGACCACGU
--(((((..(((((...-----.)))))..((.(((((...((..(((.((((.......)))))))..))..)))))))....)))))...... ( -25.20)
>consensus
__UCCUGCCUGGUGACC_____CCACCAACCGUCCAUAUUAUGUAUUGUGGCACCACCCAUGCCCAACCCAAUUGUGGCGUUAAUAGGACCACGU
..(((((..(((((.........)))))..((.(((((...((..(((.((((.......)))))))..))..)))))))....)))))...... (-19.30 = -20.63 +   1.33)

alignment

secondary structure

dotplot

Window 7

Location	18,166,126 – 18,166,221
Length	95
Sequences	3
Columns	95
Reading direction	reverse
Mean pairwise identity	89.93
Mean single sequence MFE	-33.37
Consensus MFE	-26.49
Energy contribution	-26.50
Covariance contribution	0.01
Combinations/Pair	1.12
Mean z-score	-2.23
Structure conservation index	0.79
SVM decision value	0.26
SVM RNA-class probability	0.657484
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18166126 95 - 22224390
ACGUGGUCCUAUUAACUGUCCAACUGGGUUGGGCAUGGGUGGUGCCACAAUACAUAAUAUGAACGGCUGGUGGUGCCUGGUCACCAGGCAGGACG
..((((..(((((...((((((((...))))))))..)))))..)))).....................((..(((((((...)))))))..)). ( -35.90)
>DroSec_CAF1 28339 88 - 1
ACGUGGUCCUAUUAACGCCACAAUUGGGUUGGGCAUGGGUGGUGCCACAAUACAUAAUAUGGACGGUUGGUGG-----GGUCACCAGGCAGGA--
..(((..(((((((((.(((....((..((((((((.....))))).)))..)).....)))...))))))))-----)..))).........-- ( -32.10)
>DroSim_CAF1 28425 88 - 1
ACGUGGUCCUAUUAACGCCACAAUUGGGUUGGGCAUGGGUGGUGCCACAAUACAUAAUAUGGACGGUUGGUGG-----GGUCACCAGGCAGGA--
..(((..(((((((((.(((....((..((((((((.....))))).)))..)).....)))...))))))))-----)..))).........-- ( -32.10)
>consensus
ACGUGGUCCUAUUAACGCCACAAUUGGGUUGGGCAUGGGUGGUGCCACAAUACAUAAUAUGGACGGUUGGUGG_____GGUCACCAGGCAGGA__
..((((..(((((...(((.((((...)))))))...)))))..))))................(.(((((((.......))))))).)...... (-26.49 = -26.50 +   0.01)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:18 2006