Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,165,616 – 18,165,714 |
Length | 98 |
Max. P | 0.668031 |
Location | 18,165,616 – 18,165,714 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.32 |
Mean single sequence MFE | -30.51 |
Consensus MFE | -23.94 |
Energy contribution | -24.22 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.74 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18165616 98 + 22224390 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGAAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACUCUCGCG---------------- (((((((.....))))))).(((((((......(((((((((....)))))).)))...)))))))((((((((.........)))))).))......---------------- ( -29.10) >DroPse_CAF1 66056 114 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUUCCACUGACAGGACAGCCACGGCGGAUGGUUGGAUGC (((((((.....)))))))......(((.(((((......(((((((((((.(((((((((..(........)..))))))...))).)).))))))))).....))))).))) ( -35.30) >DroEre_CAF1 23427 94 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCUC-------------------- (((((((.....))))))).(((((((..(((.(((.(((((....)))))))))))..)))))))..((((((.........)))))).....-------------------- ( -29.60) >DroWil_CAF1 77595 106 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUUAGAGUUAAUUAGCCCGUCUAUGCCACUGACAGGACGCAC--------UGCUUGAAUAU .(((((........(((((....(((((.(((((((.(((((....)))))))))).))(((....))).......)))))...)))))......--------.)))))..... ( -24.86) >DroYak_CAF1 25398 94 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACCCU-------------------- (((((((.....))))))).(((((((..(((.(((.(((((....)))))))))))..)))))))..((((((.........)))))).....-------------------- ( -29.60) >DroPer_CAF1 67484 114 + 1 GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGUGGCUUUGUGUUGGAGUUAAUUAGCCUUUCUAUGCCACUGACAGGACAGCCACGGCGGAUGGUUGGAUGC (((((((.....)))))))......(((.(((((......(((((((((((.(((..(.((....(((.....))).))..)..))).)).))))))))).....))))).))) ( -34.60) >consensus GCAAGUUCAUUAAGCUUGUAAAUUGGCAAUCAACACCAAAGUUGCGGCUUUGUGUGGGAGCUAAUUAGCCUGUCUAUGCCACUGACAGGACACCC___________________ (((((((.....))))))).(((((((..((.((((.(((((....))))))))).)).)))))))..((((((.........))))))......................... (-23.94 = -24.22 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:17 2006