Locus 7291

Sequence ID X_DroMel_CAF1
Location 18,164,188 – 18,164,303
Length 115
Max. P 0.547164
window11944

overview

Window 4

Location 18,164,188 – 18,164,303
Length 115
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 89.65
Mean single sequence MFE -42.14
Consensus MFE -31.32
Energy contribution -33.40
Covariance contribution 2.08
Combinations/Pair 1.13
Mean z-score -1.60
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.547164
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18164188 115 + 22224390
UGCACUUUGUGCGGCUAUCUGGUUGCCACCAAUGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGUCUGUUCUGCGAUAGCCCACGAGGUGUCCGGUUUGCUCGAGUGGU
.((((((((((.(((((((..(((((.((((((...........))))))))))).......(((.(((....))).))))))))))))))))))))(((.((.....)).))). ( -43.10)
>DroSec_CAF1 26411 115 + 1
UGCACUUUGUGGCGCUAUCUGGUUGCCACCAACGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCGGUUUGCUCGAGUGGU
.(((((((((((.((((((.((((((((...........))))))))...(((....(((((.......)))))...))))))))))))))))))))(((.((.....)).))). ( -44.90)
>DroSim_CAF1 26479 115 + 1
UGCACUUUGUGGGGCUAUCUGGUUGCAACCAACGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCGGUUUGCUCGAGUGGU
.((((((((((((.(((((..((((((.((((.............))))))))))..(((((.......)))))......)))))))))))))))))(((.((.....)).))). ( -43.82)
>DroEre_CAF1 22072 115 + 1
UACACUUUGUACGGCUUUCUGGCUGCCACCAAUGAAUCCUGGCAAUUGCUGCAGCACCAGGUGUAAAAUGCCUGUCCUGCGAUAGGCCACAAGGUGUCCGACUUGGUCGAGUGGU
.(((((((((..(((((((.((((((((...........)))))...)))((((...(((((((...)))))))..)))))).))))))))))))))((.((((....)))))). ( -38.80)
>DroYak_CAF1 23904 115 + 1
UGCACUUUGCAGUGCUAUCUGCUUGCCACAAAUGAAUCCUGGCAAUUGGUGCAACAGCAGGUGCAAAACGCCUGCUCUGCGAUAGGCCACCAGGUGUCCGGUUUGCUCGAGUGGU
.(((((....)))))...(..((((...(((((((..(((((....(((((((..((((((((.....)))))))).))).....)))))))))..))..)))))..))))..). ( -40.10)
>consensus
UGCACUUUGUGGGGCUAUCUGGUUGCCACCAAUGAAUCCUGGCAAUUGGUGCAACAUCAGGUGCGAAAUGCCUGUUCUGCGAUAGCCCACGAGGUGUCCGGUUUGCUCGAGUGGU
.(((((((((((.((((((..(((((.((((((...........)))))))))))..((((((.....))))))......)))))))))))))))))(((.((.....)).))). (-31.32 = -33.40 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:16 2006