Locus 7290

Sequence ID X_DroMel_CAF1
Location 18,159,555 – 18,159,657
Length 102
Max. P 0.916135
window11943

overview

Window 3

Location 18,159,555 – 18,159,657
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 68.87
Mean single sequence MFE -25.46
Consensus MFE -11.23
Energy contribution -11.33
Covariance contribution 0.10
Combinations/Pair 1.29
Mean z-score -1.95
Structure conservation index 0.44
SVM decision value 1.11
SVM RNA-class probability 0.916135
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18159555 102 + 22224390
-------UGUAGACA----UGCUACAUGGCUCCAUUGCCAUAU-UGGCAAUGCAUCAACAAGUUCUCCUUUACUUCUUUAUCCCAGUGA--CUUACUCCCGCAGUG----GGACCUGCUU
-------.((((...----(((((.(((((......)))))..-)))))...............................(((((.((.--(........))).))----))).)))).. ( -24.90)
>DroSec_CAF1 21662 105 + 1
-------UGUAGACAUGUAUGCUACAUGGUUCCAUUGCCAUAU-UGGCAAUGCAUCAACAAGUUCUCCUUUACUUCUUUAUCCCGG-GA--AUUACUCCCUCAGUG----GGACCCGCUU
-------(((((.((....))))))).((((((((((((....-.))))))((......((((........)))).........((-((--.....))))...)))----)))))..... ( -27.10)
>DroSim_CAF1 21706 105 + 1
-------UGUAGACAUGUAUGCUACAUGGUUCCAUUGCCAUAU-UGGCAAUGCAUCAACAAGUUCUCCUUUACUUCUUUAUCCCGG-GA--CUUACUCCCUCAGUG----GGACCCGCUU
-------(((((.((....)))))))((((..(((((((....-.))))))).))))..((((........))))........(((-(.--((((((.....))))----)).))))... ( -27.80)
>DroEre_CAF1 17884 100 + 1
-------GAUAUACAUGUA-----GGUGGUUCCAUUGCCAUAU-UGGCAAUGCAUCAACAAGUCCCCCUUUACAUCUUUAUUAAGG-GA--CUUACUCCUUCAACG----GGACCCGCUU
-------...........(-----(((((((((((((((....-.))))))........(((((((..................))-))--)))...........)----))).)))))) ( -27.57)
>DroYak_CAF1 19875 104 + 1
-------GAUAUACAUGUA-----GGUGGUUCCAUUGCCGCAU-UGGCAAUGCAUCAACAAGUACUGCUUUUCGUCAUUUUUCCGG-GC--UUUACUCCCUUACUAGGAAGGACCCGCUU
-------....(((.(((.-----((((....(((((((....-.))))))))))).))).)))...................(((-((--(((....(((....))))))).))))... ( -25.10)
>DroAna_CAF1 65407 102 + 1
UAUAUUUGGUAUAUAAGUA---------UGUCUGUUGCAAUUUAUAGCAACUUAUCAAAAAAUCCCCAUCCUGGCCUCUAUUGGUG-GAUCCUUAAUCCGGAUAUC----GGC----CCU
....(((((((....((..---------...))(((((........))))).))))))).............((((..((((..((-(((.....)))))))))..----)))----).. ( -20.30)
>consensus
_______GGUAGACAUGUA_____CAUGGUUCCAUUGCCAUAU_UGGCAAUGCAUCAACAAGUUCUCCUUUACUUCUUUAUCCCGG_GA__CUUACUCCCUCAGUG____GGACCCGCUU
...........................(((((((((((((....))))))))................................((.((.......))))..........)))))..... (-11.23 = -11.33 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:15 2006