Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,991,824 – 1,991,943 |
Length | 119 |
Max. P | 0.970602 |
Location | 1,991,824 – 1,991,943 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -21.30 |
Energy contribution | -21.10 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.39 |
Structure conservation index | 1.00 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1991824 119 - 22224390 AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUCCCCUCCGUCGCCCUCUCCGC-CAUUCAUCAUCCAACCGACACACGCCCCCCGCUGUGCGGUGUUGUUGCAUUUUUAACAACGAAUU ........((((((((((.........(((......)))....((.......))-..)))))......((((.((((.((.....))))))))))(((((((......)))))))))))) ( -22.40) >DroSec_CAF1 23882 120 - 1 AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUCCCCUCCGUCGCCCUCUCCACCCAUUCCUCAUCCAACCGACACACGCCCCCCGCUGUGCGGUGUUGUUGCAUUUUCAACAACGAAUU ........(((((..(((((.(.....).)))))..................................((((.((((.((.....))))))))))(((((((......)))))))))))) ( -23.50) >DroSim_CAF1 18321 120 - 1 AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUCCCCUCCGUCGCCCUCUCCGCCCAUUCCUCAUCCAACCGACACACGCCCCCCGCUGUGCGGUGUUGUUGCAUUUUCAACAACGAAUU ........(((((..(((((.(.....).)))))..................................((((.((((.((.....))))))))))(((((((......)))))))))))) ( -23.50) >DroEre_CAF1 13622 118 - 1 AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUCCCCUCCGUCGCC--CUCCGCCCCUCUCUCAACCAACCGACACACGCCCCCCGCUGUGCUGUGUUGUUGCAUUUUUAACAACGAAUU ........(((((..(((((.(.....).)))))............--..................((((.(((((((((........))).)))))))))).............))))) ( -16.20) >DroYak_CAF1 24457 120 - 1 AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUUCCCUCCGUCGCCUUCUCCGCCCCUCUCUCAUCCAACCGACACACGCCCCCCGCUGUGCGGUGUUGUUGCAUUUUUAACAACGAAUU ........(((((((((..........(((......))).(..((.......))..)....))))...((((.((((.((.....))))))))))(((((((......)))))))))))) ( -21.40) >consensus AGAAAAUAAAUUCAUGAAACCCAAAACGAGUUUCCCCUCCGUCGCCCUCUCCGCCCAUUCCUCAUCCAACCGACACACGCCCCCCGCUGUGCGGUGUUGUUGCAUUUUUAACAACGAAUU ........(((((..(((((.(.....).)))))..................................((((.((((.((.....))))))))))(((((((......)))))))))))) (-21.30 = -21.10 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:19 2006