Locus 7289

Sequence ID X_DroMel_CAF1
Location 18,154,107 – 18,154,211
Length 104
Max. P 0.729366
window11941 window11942

overview

Window 1

Location 18,154,107 – 18,154,211
Length 104
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 87.50
Mean single sequence MFE -22.05
Consensus MFE -16.31
Energy contribution -16.81
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.42
SVM RNA-class probability 0.729366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18154107 104 + 22224390
AUGCUGCCAUUUCACAUAACUGCCUCUGUCCCUUUCCUU-UUCUCCGGCAUUCUUUUGUUGGCUUGAUUUAUUUGUGGUAUCUUCGCUCGUAUUGACAUGGCAAC
....((((((.(((.(((...((....((.((.......-.((.((((((......))))))...)).........)).))....))...)))))).)))))).. ( -20.83)
>DroSec_CAF1 16337 103 + 1
AUGCUGCCAUUUCACAUUUCUGUCUCUGUCCCUUUCCUU-UUCUCCGGCAUUUUUCUGUUGGCUUGAUUUAUUUGUGGUA-CUUUGCUCAAAGUGACAUGGCAAC
....((((((.((((.(((..((....((.((.......-.((.((((((......))))))...)).........)).)-)...))..))))))).)))))).. ( -22.73)
>DroSim_CAF1 16366 103 + 1
AUGCUGCCAUUUCACAUUUCUGUCUCUGUCCCUUUCCUU-UUCUCCGGCAUUUCUCUGUUGGCUUGAUUUAUUUGUGGUA-CUUUGCUCAAAGUGACAUGGCAAC
....((((((.((((.(((..((....((.((.......-.((.((((((......))))))...)).........)).)-)...))..))))))).)))))).. ( -22.73)
>DroEre_CAF1 12651 100 + 1
AAGCAGCCAUUUCACUUGACUGUCUCUCUCCCUUUCGUUCUUCUCCGGCAUUCUUCUG----CUUGAUUUAUUUGUGGUG-CGCUGCUCGUAGUGACAUGGCAAC
.....(((((.((((((((........................((.((((......))----)).)).......(..(..-..)..)))).))))).)))))... ( -21.90)
>consensus
AUGCUGCCAUUUCACAUUACUGUCUCUGUCCCUUUCCUU_UUCUCCGGCAUUCUUCUGUUGGCUUGAUUUAUUUGUGGUA_CUUUGCUCAAAGUGACAUGGCAAC
.....(((((.((((.((...((.......((.........((.((((((......))))))...)).........)).......))...)))))).)))))... (-16.31 = -16.81 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 18,154,107 – 18,154,211
Length 104
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 87.50
Mean single sequence MFE -22.77
Consensus MFE -16.68
Energy contribution -17.30
Covariance contribution 0.62
Combinations/Pair 1.14
Mean z-score -1.77
Structure conservation index 0.73
SVM decision value 0.39
SVM RNA-class probability 0.716489
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18154107 104 - 22224390
GUUGCCAUGUCAAUACGAGCGAAGAUACCACAAAUAAAUCAAGCCAACAAAAGAAUGCCGGAGAA-AAGGAAAGGGACAGAGGCAGUUAUGUGAAAUGGCAGCAU
((((((((.(((.....(((...(((...........)))..(((............((......-..))...........))).)))...))).)))))))).. ( -22.50)
>DroSec_CAF1 16337 103 - 1
GUUGCCAUGUCACUUUGAGCAAAG-UACCACAAAUAAAUCAAGCCAACAGAAAAAUGCCGGAGAA-AAGGAAAGGGACAGAGACAGAAAUGUGAAAUGGCAGCAU
((((((((((((((((....))))-).((..................((......))((......-..))...)))))....(((....)))...)))))))).. ( -23.00)
>DroSim_CAF1 16366 103 - 1
GUUGCCAUGUCACUUUGAGCAAAG-UACCACAAAUAAAUCAAGCCAACAGAGAAAUGCCGGAGAA-AAGGAAAGGGACAGAGACAGAAAUGUGAAAUGGCAGCAU
((((((((((((((((....))))-).((..................((......))((......-..))...)))))....(((....)))...)))))))).. ( -23.00)
>DroEre_CAF1 12651 100 - 1
GUUGCCAUGUCACUACGAGCAGCG-CACCACAAAUAAAUCAAG----CAGAAGAAUGCCGGAGAAGAACGAAAGGGAGAGAGACAGUCAAGUGAAAUGGCUGCUU
((.(((((.(((((((......(.-(.((.........((..(----((......)))..))......(....))).).).....))..))))).))))).)).. ( -22.60)
>consensus
GUUGCCAUGUCACUACGAGCAAAG_UACCACAAAUAAAUCAAGCCAACAGAAAAAUGCCGGAGAA_AAGGAAAGGGACAGAGACAGAAAUGUGAAAUGGCAGCAU
((((((((.((.(((((.(((..................................))))))))...................(((....))))).)))))))).. (-16.68 = -17.30 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:14 2006