Locus 7288

Sequence ID X_DroMel_CAF1
Location 18,152,616 – 18,152,711
Length 95
Max. P 0.824538
window11940

overview

Window 0

Location 18,152,616 – 18,152,711
Length 95
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 86.17
Mean single sequence MFE -32.50
Consensus MFE -25.02
Energy contribution -26.22
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.77
SVM decision value 0.69
SVM RNA-class probability 0.824538
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18152616 95 - 22224390
GGUGACGGCCAUCGAAUUGGGGUAUUUCCUCAUGGCGAUUCUAGAUUCUACAUUCACGUCACCGACCGUUUUAUUCGGUCAAGGGUAG------------UCGAUGG
(((((((((((......(((((.....))))))))).......((........)).)))))))(((((.......)))))........------------....... ( -31.20)
>DroSec_CAF1 15328 95 - 1
GGUGACGGCCAUCGAAUUGGGGUAUUUCCUCAUGGCGAUUCUAGAUUCUACAUUCACGUCACCGACCGUUUUAUUCGGUCAAGGGUAG------------CCGAUGG
(((((((((((......(((((.....))))))))).......((........)).)))))))(((((.......)))))..((....------------))..... ( -32.20)
>DroSim_CAF1 15328 95 - 1
GGUGACGGCCAUCAAAUUGGGGUAUUUCCUCAUGGCGAUUCUAGAUUCUACAUUCACGUCACCGACCGUUUUAUUCGGUCAAGGGUAG------------UCGAUGG
(((((((((((......(((((.....))))))))).......((........)).)))))))(((((.......)))))........------------....... ( -31.20)
>DroEre_CAF1 11684 95 - 1
GGUGACUGCCAGCCAAUGGGGGUAUUUCCUCAUGACGAUUCUAGAUUCUACAUUUACAUCACCGACGAUUUCAGUCGGUCAAGGGCAU------------UGGCUGG
(....)..((((((((((((((.....)))).(((((((..(((((.....))))).)))..((((.......))))))))....)))------------))))))) ( -33.20)
>DroYak_CAF1 13356 107 - 1
GGUGACGGCCAACCAAUUGGGGUAUUUCCUCAUGGCGAUUCUAGAUUCUACAUUUACGUCACCGACCGUUUCAGUCGGUCAAGGGUGAUGUAUGUAUGUAUGUAUGG
(....).((((......(((((.....)))))))))............(((((.((((((((((((((.......)))))...)))))))))...)))))....... ( -34.70)
>consensus
GGUGACGGCCAUCCAAUUGGGGUAUUUCCUCAUGGCGAUUCUAGAUUCUACAUUCACGUCACCGACCGUUUUAUUCGGUCAAGGGUAG____________UCGAUGG
(((((((((((......(((((.....)))))))))((........))........)))))))(((((.......)))))........................... (-25.02 = -26.22 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:12 2006