Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,129,409 – 18,129,518 |
Length | 109 |
Max. P | 0.897427 |
Location | 18,129,409 – 18,129,518 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -24.61 |
Consensus MFE | -21.51 |
Energy contribution | -22.32 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.87 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18129409 109 - 22224390 AGUUAUGCCCCCCGUCAGCC-------G----CUGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAU ....................-------.----.(((((((((((.................(((((.....)))))..(....)((((((((....)))))).)))))))))).)))... ( -29.00) >DroSec_CAF1 11764 108 - 1 AGUUAUGCCCCCCGUCACCC-------U----CCGCCACCCACAAAACUUACCCACGCAAAGCCAUUAAAAAUGGCCUGGAAACGAAAUGAUU-UUAUCAUUAUCUGUGGGCGUGCAAAU ....................-------.----..(((.((((((.................(((((.....)))))..(....)((((((((.-..)))))).)))))))).).)).... ( -23.20) >DroEre_CAF1 11612 119 - 1 AGUAAUGCCCCCCGUCUCCCGUCACCCGCCAACCGCCACCCACAAAACUAGCCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAACGAUU-UUAUCAUUAACUGUGGGUGUGCAAAU ..................................((((((((((......((....))........(((((.((...((....))...)).))-)))........)))))))).)).... ( -21.10) >DroYak_CAF1 13675 107 - 1 AGUAAGUACCCCGUACUCC-------------CCGCCACCCAUAAAACUUACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGAUUUUUAUCAUUAUCUGUGGGUGUGCAAAU .(..(((((...)))))..-------------).((((((((((........(((.(((.............)))..)))....((((((((....)))))).)))))))))).)).... ( -25.12) >consensus AGUAAUGCCCCCCGUCACCC_______G____CCGCCACCCACAAAACUAACCCACGCAAAGCCAUUAAAAAUGCCCUGGAAACGAAAUGAUU_UUAUCAUUAUCUGUGGGUGUGCAAAU ..................................((((((((((.................(((((.....))))).((....)).((((((....))))))...)))))))).)).... (-21.51 = -22.32 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:10 2006