Locus 7285

Sequence ID X_DroMel_CAF1
Location 18,126,052 – 18,126,151
Length 99
Max. P 0.703763
window11936

overview

Window 6

Location 18,126,052 – 18,126,151
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -31.10
Consensus MFE -20.36
Energy contribution -20.96
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.65
SVM decision value 0.36
SVM RNA-class probability 0.703763
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18126052 99 - 22224390
UCCACACGCUUUCAGUUGUGACGUAUUC-----CACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCGAAUGCGAAACGUCACCGAGCU-----------GAAUGUUAU
.......((.(((((((((.((((....-----.)))).))(((----(.((((....))))..-....((((((......)))))).))))....))))-----------))).))... ( -31.80)
>DroSec_CAF1 8418 99 - 1
UCCACACGCUUUCAGUUGUGACGUAUUC-----CACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCAAAUGCGAAACGUCACCGAGCU-----------GAAUGUUAU
.......((.(((((((((.((((....-----.)))).))(((----(.((((....))))..-....((((((......)))))).))))....))))-----------))).))... ( -31.80)
>DroSim_CAF1 9177 99 - 1
UCCACACGCUUUCAGUUGUGACGUAUUC-----CACGUGGCGAC----GAGUGAGUAAUCGCAA-GUAGUUCGCAAUCAAAUGCGAAACGUCACCGAGCU-----------GAAUGUUAU
.......((.(((((((((.((((....-----.)))).))(((----(.((((....))))..-....((((((......)))))).))))....))))-----------))).))... ( -31.80)
>DroEre_CAF1 8621 98 - 1
UCCACACGCUCCCAGUUGUGACGUACUCCACUCCACGUGGCGAC----GUGUGAGUAAUCGCAA-------GGCAAUCGAAUGCAAAACGUCACUGAGCU-----------AAAUAUUAU
.......((((......(((((((.....(((((((((....))----))).))))...(....-------)(((......)))...))))))).)))).-----------......... ( -28.20)
>DroYak_CAF1 9412 115 - 1
UCCACACGCUUUCAGUUGUGACGUAUUC-----CACGUGGCGGCCACAAAGUGAGUAAUCGCAAUGGCAAUGGCAAUCGAAUGCGAAACGUCACUGAACCGUUGCUGUAUGUAUUAUUAU
......((((((..(((((.((((....-----.)))).)))))...))))))((((((.(((((((((((((...(((...(((...)))...))).)))))))))).))))))))).. ( -31.90)
>consensus
UCCACACGCUUUCAGUUGUGACGUAUUC_____CACGUGGCGAC____GAGUGAGUAAUCGCAA_GUAGUUCGCAAUCGAAUGCGAAACGUCACCGAGCU___________GAAUGUUAU
..((((.((.....))))))................((((((........((((....))))........(((((......)))))..)))))).......................... (-20.36 = -20.96 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:09 2006