| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,125,375 – 18,125,473 |
| Length | 98 |
| Max. P | 0.565179 |
| Location | 18,125,375 – 18,125,473 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 86.32 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -13.21 |
| Energy contribution | -14.21 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18125375 98 + 22224390 CCUACGCGAAGAUAUGUGUACUGGAAGAUAUAAUAUCUUUGAGCUACAAUCACAUAUAAUACAUAUAAUAUACAAUUCAAGUCUUUGCGCCGUUUAAA ....(((((((((.((((((((.(((((((...))))))).)).))))......((((.....))))..........)).)))))))))......... ( -21.60) >DroSec_CAF1 7865 89 + 1 CCUACGCGAAGAAAUGUGUGCUGGAAGAUAUUAUAUCUUUGAGCUACAAUCACAUAU---------CAGAUACAAUUCAAGUCUUUAAGCUAUUUAAA .....((...((.(((((.(((.(((((((...))))))).)))......))))).)---------).((......))..........))........ ( -17.80) >DroSim_CAF1 8552 89 + 1 CCUACGCGAAGAUAUGUGUGCUGGAAGAUAUUAUAUCUUUGAGCUACAAUCACAUAU---------CAGAUACAAUUAAAGUCUUUGGGCUAUUUAAA ..........((((((((.(((.(((((((...))))))).)))......)))))))---------)............((((....))))....... ( -22.50) >consensus CCUACGCGAAGAUAUGUGUGCUGGAAGAUAUUAUAUCUUUGAGCUACAAUCACAUAU_________CAGAUACAAUUCAAGUCUUUGAGCUAUUUAAA ....(.((((((((((((.(((.(((((((...))))))).)))......))))).........................))))))).)......... (-13.21 = -14.21 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:08 2006