Locus 7280

Sequence ID X_DroMel_CAF1
Location 18,121,958 – 18,122,075
Length 117
Max. P 0.863882
window11923

overview

Window 3

Location 18,121,958 – 18,122,075
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.62
Mean single sequence MFE -30.90
Consensus MFE -27.74
Energy contribution -27.70
Covariance contribution -0.04
Combinations/Pair 1.03
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.84
SVM RNA-class probability 0.863882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18121958 117 - 22224390
UCC-CUUUU-UGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGCAAUGGCCAUCAA-AAUCGGCAUCUGAAUCGCCAGAGCGUCGCAUUGGAAUUCG
..(-(....-((((.(((....)(((((((......((((((((..(((((..........))))).))))))))....-..((((...))))..)))))))..))))))..))...... ( -30.60)
>DroSec_CAF1 4574 119 - 1
UCCUCUUUU-CGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGCAAUGGCCAUCAAAAAUCGGCAUCUAAAUCGCCAGAGCGUCGCAUUGGUAUUCG
.........-((.(((((((.....(((((((....((((((((..(((((..........))))).)))))))).........(((.........))).).))))))..))))))).)) ( -30.50)
>DroSim_CAF1 5197 119 - 1
UCCUCUUUU-CGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGCAAUGGCCAUCAAAAAUCGGCAUCUGAAUCGCCAGAGCGUCGCAUUGGAAUUCG
......(((-(((((..((....(((((((......((((((((..(((((..........))))).)))))))).......((((...))))..))))))).))..))).))))).... ( -30.10)
>DroEre_CAF1 4415 117 - 1
UCC-CUCUU-CGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGGAAUGGCCAUCAA-AAUCGGCAUCUGAAUCGCCAGAGCGUUGCAUCGGAAUUCC
...-...((-((((((.((....(((((((......((((((((..(((((..........))))).))))))))....-..((((...))))..))))))).)).)))).))))..... ( -32.50)
>DroYak_CAF1 4867 118 - 1
UCC-CUUUUACGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGCAAUGGCCAUCAA-AAUCGGCAUCUGAAUCGCCAGAGCGUUGCAUCGGAAUUCG
(((-.....((((....(....)(((((((......((((((((..(((((..........))))).))))))))....-..((((...))))..)))))))))))......)))..... ( -30.80)
>consensus
UCC_CUUUU_CGUGUACCGAAAGUCUGGCGCCAAACUGGCCAUUAAUUAUAUCAAUUCCAUUGUAGCAAUGGCCAUCAA_AAUCGGCAUCUGAAUCGCCAGAGCGUCGCAUUGGAAUUCG
................((((...(((((((......((((((((..(((((..........))))).)))))))).......((((...))))..)))))))((...)).))))...... (-27.74 = -27.70 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:58 2006