Locus 728

Sequence ID X_DroMel_CAF1
Location 1,991,591 – 1,991,706
Length 115
Max. P 0.999687
window1177

overview

Window 7

Location 1,991,591 – 1,991,706
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.58
Mean single sequence MFE -35.46
Consensus MFE -30.73
Energy contribution -30.77
Covariance contribution 0.04
Combinations/Pair 1.18
Mean z-score -2.97
Structure conservation index 0.87
SVM decision value 3.89
SVM RNA-class probability 0.999687
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1991591 115 - 22224390
AAGUUCUAUAUCGAAAGGUAUCAGUUUUUGUUGUUGCUGCGGCAACCCUGCUU-----ACAUUUUGCUUUACUCUGCCGAAAUAAACAGUCUAGGGUUGUCAGCUGUAACGAAUCUGAGA
........((((....))))((((..(((((((..((((..(((((((((((.-----..(((((((........).))))))....)))..))))))))))))..))))))).)))).. ( -35.50)
>DroSec_CAF1 23644 120 - 1
AAGUUCUAUAUCGAAAGGUAUCAGUUUUUGUUGUUGCUGCGGCAACCCUGCUUUUCUCACAUUUUGCUUCACUUUGCCGAAAUAAACAAUUCAGGGUUGUCAGCUGUAACGAAUUUGAGA
((((((.(((((....)))))...........(((((.((((((((((((..((......(((((((........).))))))....))..)))))))))).)).))))))))))).... ( -34.70)
>DroSim_CAF1 18089 117 - 1
AAGUUCUAUAUCGAAAGGUAUCAGUUUUUGUUGUU---GCGGCAACCCUGCUUUUCUCACAUUUUGCUUCACUCUGCCGAAAUAAACAAUUCAGGGUUGUCAGCUGUAACGAAUCUGAGA
........((((....))))((((..(((((((..---((((((((((((..((......(((((((........).))))))....))..)))))))))).))..))))))).)))).. ( -35.30)
>DroEre_CAF1 13384 120 - 1
AAGUUCUAUAUCGAAAGGUAUCAGUUUUUGAUGUUGUUGCGGCAACCCUGGUUUUCUCUCAUUUUGCUUCACUCUGCCGAAAUAAACAAACCAGGGUUGUCAGUUGUGACGAAUCUGAGA
(((..(((((((....))))).))..)))(((.((((..(((((((((((((((......(((((((........).))))))....))))))))))))))....)..)))))))..... ( -37.20)
>DroYak_CAF1 24219 118 - 1
AAGUUCUAUAUCGAAAGGUAUCAGUU-UUGUUGAUGAUGCGACAACCCUGCUUUUCUCUCAUUUUGCUUCGCUCUGCCGAAAUAAACAAACCAGGGUUGUCAGCUGUGACGAAUCUGA-A
........((((....))))((((.(-((((((.....((((((((((((.(((......(((((((........).))))))....))).)))))))))).))..))))))).))))-. ( -34.60)
>consensus
AAGUUCUAUAUCGAAAGGUAUCAGUUUUUGUUGUUGCUGCGGCAACCCUGCUUUUCUCACAUUUUGCUUCACUCUGCCGAAAUAAACAAUCCAGGGUUGUCAGCUGUAACGAAUCUGAGA
........((((....))))((((......(((((((.((((((((((((..........(((((((........).))))))........)))))))))).)).)))))))..)))).. (-30.73 = -30.77 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:18 2006