| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,120,810 – 18,120,916 |
| Length | 106 |
| Max. P | 0.623351 |
| Location | 18,120,810 – 18,120,916 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -26.09 |
| Energy contribution | -26.09 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18120810 106 + 22224390 CGCUGCUCAGCAGUUUCUCCGUUCACGGAAUCGAAUCGAAAGCAAUGCUCCGACCGCUGGCCAGCUGCUCAUCUGUUCAUCUUUUCAUUUGCUCUUGGGCAAUCAA .((((..((((......((((....))))......(((..(((...))).)))..))))..))))((((((...((..............))...))))))..... ( -27.94) >DroSec_CAF1 3415 106 + 1 CGCUGCUCAGCAGUUUCUCCGUUCACGGAAUCGAAUCGAAAGCAAUGCUCCGACCGCUGGCCAGCUGCUCAUCUGCUCAUCUGUUCAUCAGUUCUUGGGCAAUCAA .((((..((((......((((....))))......(((..(((...))).)))..))))..))))........((((((.(((.....)))....))))))..... ( -30.30) >DroSim_CAF1 3689 90 + 1 CGCUGCUCAGCAGUUUCUCCGUUCACGGAAUCGAAUCGAAAGCAAUGCUCCGACCGCUGGCCAGCUGCUCA----------------UCAGCUCUUGGGCAAUCAA .((((..((((......((((....))))......(((..(((...))).)))..))))..))))((((((----------------........))))))..... ( -28.30) >consensus CGCUGCUCAGCAGUUUCUCCGUUCACGGAAUCGAAUCGAAAGCAAUGCUCCGACCGCUGGCCAGCUGCUCAUCUG_UCAUCU_UUCAUCAGCUCUUGGGCAAUCAA .((((..((((......((((....))))......(((..(((...))).)))..))))..))))((((((........................))))))..... (-26.09 = -26.09 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:57 2006