Locus 7275

Sequence ID X_DroMel_CAF1
Location 18,119,008 – 18,119,125
Length 117
Max. P 0.523019
window11914

overview

Window 4

Location 18,119,008 – 18,119,125
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.19
Mean single sequence MFE -27.15
Consensus MFE -23.39
Energy contribution -23.23
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.29
Structure conservation index 0.86
SVM decision value -0.02
SVM RNA-class probability 0.523019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18119008 117 + 22224390
AAUCUCCCUUCUCG-GCUCUUCC--UUUCACAGAUCUCCAAUUCUCCCGGCCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCACUGCG
.(((.....(((.(-((((....--......(((........))).(((((((.......)))))))......................)))))..))).....)))............. ( -25.50)
>DroSec_CAF1 1622 117 + 1
AAUCUCCCUCCCCA-GCUCUUCC--UUUCACAGAUCUCCAAUUCUCCCGGCCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCUCUGCG
..............-((......--...((((((..((((...((((((((((.......))))))).......(....).........)))...))))..)))).)).........)). ( -25.37)
>DroSim_CAF1 1893 117 + 1
AAUCUCCCUCCUCG-GCUCUUCC--UUUCACAGAUCUCCAAUUCUCCCGGCCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCUCUGCG
.(((....(((..(-((((....--......(((........))).(((((((.......)))))))......................)))))..))).....)))............. ( -28.00)
>DroEre_CAF1 1552 117 + 1
AAUCCCCCUCCUCG-GCUCUUCC--UUCCACAGAUCUCCAAUUCUCCCGGCCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCUCUGCG
.(((....(((..(-((((....--......(((........))).(((((((.......)))))))......................)))))..))).....)))............. ( -27.30)
>DroYak_CAF1 1825 120 + 1
AAUCUCCCUCCACGGGCUCUUCCUCUUCCACAGAUCUCCAAUUCUCCCGGUCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCUCUGCG
.(((....((((.((((((............(((........))).(((((((.......)))))))......................)))))))))).....)))............. ( -29.60)
>consensus
AAUCUCCCUCCUCG_GCUCUUCC__UUUCACAGAUCUCCAAUUCUCCCGGCCUUAUCGCUGGGCCGGAAUCUACGCGCGCACCUUCACUGAGCCCUGGAUUUUUGAUGUUCUCCUCUGCG
...............((...........((((((..((((...((((((((((.......))))))).......(....).........)))...))))..)))).)).........)). (-23.39 = -23.23 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:50 2006