Locus 7273

Sequence ID X_DroMel_CAF1
Location 18,115,981 – 18,116,100
Length 119
Max. P 0.641858
window11911

overview

Window 1

Location 18,115,981 – 18,116,100
Length 119
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 92.69
Mean single sequence MFE -36.20
Consensus MFE -29.86
Energy contribution -31.17
Covariance contribution 1.31
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.641858
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18115981 119 - 22224390
AUGUCAACAAUUAGUUGGCACAAUUGGCAUUGACGUAGCCGAUAUUGGCCAAAUAUUGACACACAUCCCGAGCGGCAAGUUCCCGAGCUUGGUGCAGAGUGAGAAAAGGUGGAUCGACU
..(((..((((...(((((.((((((((.........))))))..)))))))..)))).(((...((.((.(((.((((((....)))))).)))....)).))....)))....))). ( -34.10)
>DroSec_CAF1 24281 118 - 1
AUGUCAACAAUUAGUUGGCACAAUUGGCAUUGACGUAGCCGAUAUUGGCCAAAUAUUGACACACAUCCCGAGCGGCAAGUUC-CGAGCUUGGUGCAGAGUAAGAAAAGGUAGCUCGACU
..(((..((((...(((((.((((((((.........))))))..)))))))..)))).............(((.(((((..-...))))).))).((((...........))))))). ( -32.80)
>DroEre_CAF1 21674 115 - 1
AUGUCAACAAUUAGUUGGCACAAUUGGCAUUGACGUAGCCGAU---GGCCAAAUAUUGACACACAUCCCGAGCGGCAAGUUC-CGCGCUCGGUACAGAGUGAGAAAAGGUGGCUCGAUU
.((((((.......(((((...((((((.........))))))---.)))))...)))))).......(((((.((...(((-..(((((......))))).)))...)).)))))... ( -40.90)
>DroYak_CAF1 24607 118 - 1
AUGUCAACAAUUAGUUGGCACAAUUGGCAUUGACGUAGCCGAUAUUGGGCAAAUAUUGACACACAUCCCGAGCGCCGAGUUC-CGCGCUUGGUACAGAGUGAGAAAAGUUGGCUCGAAA
.(((((((.....)))))))..((((((.........)))))).((((((.(((.((..(((.(...((((((((.(....)-.))))))))....).)))...)).))).)))))).. ( -37.00)
>consensus
AUGUCAACAAUUAGUUGGCACAAUUGGCAUUGACGUAGCCGAUAUUGGCCAAAUAUUGACACACAUCCCGAGCGGCAAGUUC_CGAGCUUGGUACAGAGUGAGAAAAGGUGGCUCGACU
.((((((.......(((((...((((((.........))))))....)))))...)))))).......(((((.((...(((...(((((......))))).)))...)).)))))... (-29.86 = -31.17 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:47 2006