Locus 7272

Sequence ID X_DroMel_CAF1
Location 18,115,736 – 18,115,850
Length 114
Max. P 0.525827
window11910

overview

Window 0

Location 18,115,736 – 18,115,850
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.36
Mean single sequence MFE -28.73
Consensus MFE -20.19
Energy contribution -21.00
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.46
Structure conservation index 0.70
SVM decision value -0.02
SVM RNA-class probability 0.525827
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18115736 114 + 22224390
CCAUUUCAUCCAUUCAUUCACUUA----GCCAGCG--AUUCCACUCAAUCGUCUAUUCAGGGCGAUGAGCAAAGUUUGGCUUUCGCUGAAAUUUCUCAAUUGUCGUCAUAGUCUGGGAAA
........................----..(((((--(..(((((((.((((((.....)))))))))).......)))...))))))...((((((((((((....))))).))))))) ( -27.21)
>DroSec_CAF1 24014 115 + 1
CCAUUUUAUCCAUUCAUUCACUCA----GCCAGCGCGAUU-CACUCAAUCGUCUAUUCAGGGCGAUGAGCAAAGUUUGACUUUCGCUGAAAUUUCUCAAUUGUCGUCAUAGUUGAGGAAA
........................----..(((((.((.(-((((((.((((((.....)))))))))).......))).)).)))))...((((((((((((....)))))))))))). ( -29.71)
>DroEre_CAF1 21416 112 + 1
CCACUCCAUUCAUUCAUUCGCUCA----GUU---ACGAGU-CACUCAAUCGUCUAUUCAGGGCGAUGAGCAAAAUUUGGCUUUCGCUGAAAUUUCUCAAUUGUCGUCAUAGUUGGGGAAA
.....................(((----((.---..((((-((((((.((((((.....)))))))))).......))))))..)))))..((((((((((((....)))))))))))). ( -29.71)
>DroYak_CAF1 24341 118 + 1
CCACUCCAUUCAUUCAUUCACUCACUCAGUU-GGGCGAUU-CACUCAACCGUCUAUUCGGGGCGAUGAGCAAAGUUUGGCUUUCGCUGAAAUUUCUCAAUUGUCGUCAUAGUUGGGGAAA
.................((.((((......)-))).))((-(......(((......)))(((((.((((........)))))))))))).((((((((((((....)))))))))))). ( -28.30)
>consensus
CCACUCCAUCCAUUCAUUCACUCA____GCC_GCGCGAUU_CACUCAAUCGUCUAUUCAGGGCGAUGAGCAAAGUUUGGCUUUCGCUGAAAUUUCUCAAUUGUCGUCAUAGUUGGGGAAA
...........................................((((.((((((.....)))))))))).....((((((....)))))).((((((((((((....)))))))))))). (-20.19 = -21.00 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:46 2006