Locus 7271

Sequence ID X_DroMel_CAF1
Location 18,115,440 – 18,115,558
Length 118
Max. P 0.752822
window11909

overview

Window 9

Location 18,115,440 – 18,115,558
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.85
Mean single sequence MFE -27.79
Consensus MFE -26.91
Energy contribution -26.37
Covariance contribution -0.55
Combinations/Pair 1.13
Mean z-score -1.65
Structure conservation index 0.97
SVM decision value 0.48
SVM RNA-class probability 0.752822
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18115440 118 - 22224390
--UUCGCCGCACCUGCGAUCUCAUAAAAGUAUCUGUUUAUGGCCACGCCAAGUGAACUACACUCAUCUGGUUAUCUGCAGAUAUUACUGUCCUAUACGAAACUUUCCCGGACACCAAGGA
--.....(((....)))..........(((((((((..(((((((.....((((.....))))....)))))))..)))))))))..(((((................)))))....... ( -28.39)
>DroEre_CAF1 21112 120 - 1
UUUUCGCCGCACCUGCGAUCUCAUAAAAGUAUCUGUUUAUGACCAUGCCAAGUGAACUACACUCAUCUGGUUAUCUGCAGAUAUUACUGUCCUAUACGAAACUUUCCCGGACAUCUAGGA
.(((((.(((....)))..........(((((((((..(((((((.....((((.....))))....)))))))..)))))))))...........)))))...(((..(....)..))) ( -30.90)
>DroYak_CAF1 24033 118 - 1
--UUCGCCGCACCUGUGAGCUCAUAAAAAUAGCUGUUUAUGAUCACGCCAAGUGAACUACACUCAUCUGGUUAUCUGCAGAUAUUACUGUCCUAUACGAAACUUUCCCGGACACCUAGGA
--....(((((...((((..(((((((........)))))))))))((((..(((.......)))..))))....))).........(((((................)))))....)). ( -24.09)
>consensus
__UUCGCCGCACCUGCGAUCUCAUAAAAGUAUCUGUUUAUGACCACGCCAAGUGAACUACACUCAUCUGGUUAUCUGCAGAUAUUACUGUCCUAUACGAAACUUUCCCGGACACCUAGGA
..((((.(((....)))..........(((((((((..(((((((.....((((.....))))....)))))))..)))))))))...........))))....(((..(....)..))) (-26.91 = -26.37 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:45 2006