Locus 7268

Sequence ID X_DroMel_CAF1
Location 18,110,426 – 18,110,516
Length 90
Max. P 0.911898
window11904

overview

Window 4

Location 18,110,426 – 18,110,516
Length 90
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 71.52
Mean single sequence MFE -20.10
Consensus MFE -16.14
Energy contribution -16.26
Covariance contribution 0.12
Combinations/Pair 1.15
Mean z-score -1.08
Structure conservation index 0.80
SVM decision value 1.08
SVM RNA-class probability 0.911898
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18110426 90 + 22224390
CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGAAUGGCCGUAAUAUAGAAUAUUUAUGACAUUUGUUACUAGUUCACUA------------------------------
......((((((.(((((...((.((((((.(.((((((((((.....))).))))))).).)))))).))...))))))))))).....------------------------------ ( -19.40)
>DroSec_CAF1 18882 90 + 1
CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGGAUGGCCGUAAUAUAGAAUAUUUAUGGCAUUUGUUACUAGCUCACUA------------------------------
......((((((.(((((...((.((((((.(.((((((((((.....))).))))))).).)))))).))...))))))))).))....------------------------------ ( -19.20)
>DroYak_CAF1 18709 120 + 1
UAUUAGGAGUGGGUGAUAUUGGUAAUACAUCUAUUAUGUUCGAACUGGUCAUAAUAUAGAACAUUUAUGGCAUUUAUUGCUGGUUUACUAACAAUAUAGAAUAUAGAACAUUUAUGGCAU
.......((((((((.(((.....)))))))))))((((((......(((((((..........)))))))...(((((.(((....))).))))).........))))))......... ( -21.70)
>consensus
CAUUACGACUGGGUAAUAUUGGUAAUAAAUCUAUUAUGUUCGGAAUGGCCGUAAUAUAGAAUAUUUAUGGCAUUUGUUACUAGUUCACUA______________________________
...........(((...(((((((((((((((((.((((((.................))))))..)))).)))))))))))))..)))............................... (-16.14 = -16.26 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:41 2006