Locus 7267

Sequence ID X_DroMel_CAF1
Location 18,110,036 – 18,110,134
Length 98
Max. P 0.999849
window11903

overview

Window 3

Location 18,110,036 – 18,110,134
Length 98
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 64.05
Mean single sequence MFE -35.27
Consensus MFE -18.87
Energy contribution -19.20
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.52
Structure conservation index 0.53
SVM decision value 4.25
SVM RNA-class probability 0.999849
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18110036 98 + 22224390
UGGAUCGUUUCGCUUCGGAUCGGAAACGAUCGUCUCGGAAUCGAAAUCGG-------------------AGAACGGGAGAUCCGGAGAAACGGUGAAUCGGAAGUGUGUGCCGAGUG
.(((((.(..((((((((((((....)))))...(((....)))...)))-------------------))..))..)))))).......(((((...(....)....))))).... ( -34.50)
>DroSec_CAF1 18515 74 + 1
UGG---------CUUCGGAUCGGAAACGAUCGUCUCGA------AGCCG---------------------------GAGAACCGCAGAAACGGAGAAUCGGAAGUG-GCGGCGAGUG
.((---------((((((((((....)))))....)))------)))).---------------------------.....((((.....((......))......-))))...... ( -28.00)
>DroYak_CAF1 18283 116 + 1
UGUUUCGUUUCAGGUCGGAUCGGAAACGAUCGGCUCGGAAUCGAAAUCGGCGGAGAAGCAACGUAUCGGAGAACCGGAGAACCGGAGAAUCGGAGAUUCGGAAGUG-ACGCCGAGUG
..(((((((((..((((.((((....))))))))..)))).)))))((((((.....((..((..((.((...((((....))))....)).))....))...)).-.))))))... ( -43.30)
>consensus
UGG_UCGUUUC_CUUCGGAUCGGAAACGAUCGUCUCGGAAUCGAAAUCGG___________________AGAAC_GGAGAACCGGAGAAACGGAGAAUCGGAAGUG_GCGCCGAGUG
.................(((((....)))))..(((((...........................................(((......))).....(....)......))))).. (-18.87 = -19.20 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:40 2006