Locus 7264

Sequence ID X_DroMel_CAF1
Location 18,107,657 – 18,107,777
Length 120
Max. P 0.890268
window11898

overview

Window 8

Location 18,107,657 – 18,107,777
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 99.58
Mean single sequence MFE -29.82
Consensus MFE -29.82
Energy contribution -29.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.47
Structure conservation index 1.00
SVM decision value 0.96
SVM RNA-class probability 0.890268
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18107657 120 + 22224390
UGCCUUAAUGGGUGUUAUUUUGUUUUGCCGUAAAUAUUUUUGCAAUGGGCGCUAAUUAAGUUUGGCUCUUUUUGGGCUCUUUUGACUGCAUCCUUCGCACUUUGUUAUGUGUGAAACUUU
.........((((((..((.......((((((((....)))))((..((.(((((......))))).))..)).)))......))..))))))(((((((........)))))))..... ( -29.82)
>DroSec_CAF1 16080 120 + 1
UUCCUUAAUGGGUGUUAUUUUGUUUUGCCGUAAAUAUUUUUGCAAUGGGCGCUAAUUAAGUUUGGCUCUUUUUGGGCUCUUUUGACUGCAUCCUUCGCACUUUGUUAUGUGUGAAACUUU
.........((((((..((.......((((((((....)))))((..((.(((((......))))).))..)).)))......))..))))))(((((((........)))))))..... ( -29.82)
>DroEre_CAF1 13887 120 + 1
UGCCUUAAUGGGUGUUAUUUUGUUUUGCCGUAAAUAUUUUUGCAAUGGGCGCUAAUUAAGUUUGGCUCUUUUUGGGCUCUUUUGACUGCAUCCUUCGCACUUUGUUAUGUGUGAAACUUU
.........((((((..((.......((((((((....)))))((..((.(((((......))))).))..)).)))......))..))))))(((((((........)))))))..... ( -29.82)
>DroYak_CAF1 15871 120 + 1
UGCCUUAAUGGGUGUUAUUUUGUUUUGCCGUAAAUAUUUUUGCAAUGGGCGCUAAUUAAGUUUGGCUCUUUUUGGGCUCUUUUGACUGCAUCCUUCGCACUUUGUUAUGUGUGAAACUUU
.........((((((..((.......((((((((....)))))((..((.(((((......))))).))..)).)))......))..))))))(((((((........)))))))..... ( -29.82)
>consensus
UGCCUUAAUGGGUGUUAUUUUGUUUUGCCGUAAAUAUUUUUGCAAUGGGCGCUAAUUAAGUUUGGCUCUUUUUGGGCUCUUUUGACUGCAUCCUUCGCACUUUGUUAUGUGUGAAACUUU
.........((((((..((.......((((((((....)))))((..((.(((((......))))).))..)).)))......))..))))))(((((((........)))))))..... (-29.82 = -29.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:35 2006