Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,107,395 – 18,107,501 |
Length | 106 |
Max. P | 0.598492 |
Location | 18,107,395 – 18,107,501 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.88 |
Mean single sequence MFE | -31.77 |
Consensus MFE | -27.54 |
Energy contribution | -26.85 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.17 |
Mean z-score | -1.40 |
Structure conservation index | 0.87 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18107395 106 + 22224390 ---GCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUAUCUCCGCCAC-----C------CUCCCCUCGGCCAAUGCUCCUGGUGGUGGUGUG ---((((((((...(((((....))))).....))))).)))...........................((((((-----(------..((....(((....)))...)).))))))).. ( -30.60) >DroSec_CAF1 15820 109 + 1 AUGGCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUCCCUCCGCUGC-----C------CUCUCCUUGGCCAAUGCUCCUGGUGGUGGUGCG ...((((((.....(((((....))))).....(((((..((.......))..)))))..(((((.....((.((-----(------........)))....))....))))))))))). ( -33.00) >DroEre_CAF1 13621 120 + 1 AUGGCGCUAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAGCUCCCCCCCCCCCCUCCCCGCAACCCCCCUCGGCCAACGCUCCUGGUGGUAGUGCG ..((.(((......(((((....))))).....(((((..((.......))..)))))....))).))..............((((...((((..(((....)))...)).))...)))) ( -31.20) >DroYak_CAF1 15613 110 + 1 AUGGCGCCAUUUCUCGCAGUGCACUCUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCC------UCACCCCACCUCCCC----CCCCUCUCGACCAACGCUCCUGGUGGUGGCGCG ...((((((......((((......))))....(((((..((.......))..)))))....------.....(((((.....----.....................))))))))))). ( -32.27) >consensus AUGGCGCCAUUUCUCGCAGUGCACUGUGCCUUUGAUGGUCGCUCCAUAUGCAUCCAUCUUCCAUCUCUCCGCCCC_____C______CCCCCCUCGGCCAACGCUCCUGGUGGUGGUGCG ...((((((((...(((((....))))).....(((((..((.......))..)))))......................................((((.......)))))))))))). (-27.54 = -26.85 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:34 2006