Locus 7260

Sequence ID X_DroMel_CAF1
Location 18,105,264 – 18,105,362
Length 98
Max. P 0.818093
window11892

overview

Window 2

Location 18,105,264 – 18,105,362
Length 98
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 98.48
Mean single sequence MFE -36.40
Consensus MFE -36.40
Energy contribution -36.40
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 1.00
SVM decision value 0.67
SVM RNA-class probability 0.818093
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18105264 98 + 22224390
UCUGGCCGUCCUGCUCCCUCGA-CUGCUGCAACUCCAUUGCUGGCCGAGAUUAAUGGCUGCGCAUUAAUCAGCCCUCGGCGAGCGGGCGCCAUCAACAC
..((((.(.(((((((......-.....((((.....))))..((((((......(((((.........)))))))))))))))))))))))....... ( -36.40)
>DroSec_CAF1 13739 98 + 1
UCUGGCCGUCCUGCUCCCUCGA-CUGCUGCAACUCCAUUGCUGGCCGAGAUUAAUGGCUGCGCAUUAAUCAGCCCUCGGCGAGCGGGCGCCAUCAACAC
..((((.(.(((((((......-.....((((.....))))..((((((......(((((.........)))))))))))))))))))))))....... ( -36.40)
>DroEre_CAF1 11345 98 + 1
UCUGGCCGUCCUGCUCCCUCGC-CUGCUGCAACUCCAUUGCUGGCCGAGAUUAAUGGCUGCGCAUUAAUCAGCCCUCGGCGAGCGGGCGCCAUCAACAC
..((((.(.(((((((((((((-(....((((.....)))).)).)))((((((((......)))))))).......)).))))))))))))....... ( -36.40)
>DroYak_CAF1 13245 99 + 1
UCUGGCCGUCCUGCUCCCUCGAACCGCUGCAACUCCAUUGCUGGCCGAGAUUAAUGGCUGCGCAUUAAUCAGCCCUCGGCGAGCGGGCGCCAUCAACAC
..((((.(.(((((((............((((.....))))..((((((......(((((.........)))))))))))))))))))))))....... ( -36.40)
>consensus
UCUGGCCGUCCUGCUCCCUCGA_CUGCUGCAACUCCAUUGCUGGCCGAGAUUAAUGGCUGCGCAUUAAUCAGCCCUCGGCGAGCGGGCGCCAUCAACAC
..((((.(.(((((((............((((.....))))..((((((......(((((.........)))))))))))))))))))))))....... (-36.40 = -36.40 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:30 2006