Locus 7259

Sequence ID X_DroMel_CAF1
Location 18,103,703 – 18,103,801
Length 98
Max. P 0.920254
window11891

overview

Window 1

Location 18,103,703 – 18,103,801
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 98.16
Mean single sequence MFE -27.82
Consensus MFE -27.84
Energy contribution -27.68
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.40
Structure conservation index 1.00
SVM decision value 1.13
SVM RNA-class probability 0.920254
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18103703 98 + 22224390
CUGGCUAUCUGGGGAUAUCUCACUAUCUGGCCAUCGACAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAAUCAAAUCAGCCGCAGUCGUGU
.(((((((....(((((......))))).(((((....)))))))))))).......((.((((((.((((.(.....)...)))).)))))).)).. ( -27.80)
>DroSec_CAF1 12197 98 + 1
CUGGCUAUCUGGGGAUAUCUCACUAUCUGGCCAUCGACAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAAUCAAAUCAGCCGCAGUCGUGU
.(((((((....(((((......))))).(((((....)))))))))))).......((.((((((.((((.(.....)...)))).)))))).)).. ( -27.80)
>DroSim_CAF1 12290 98 + 1
CUGGCUAUCUGGGGAUAUCUCACUAUCUGGCCAUCGACAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAAUCAAAUCAGCCGCAGUCGUGU
.(((((((....(((((......))))).(((((....)))))))))))).......((.((((((.((((.(.....)...)))).)))))).)).. ( -27.80)
>DroEre_CAF1 9790 98 + 1
CUGGCUAUCUGGGGAUAUCUCACUAUCUGGCCAUCGGCAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAACCAAAUCAGUCGCAGUCGUGU
.(((((((....(((((......))))).(((((....)))))))))))).......((.((((((.((((((....))...)))).)))))).)).. ( -27.60)
>DroYak_CAF1 11542 98 + 1
CUGGCUAUCUGGAGAUAUCUCACUAUCUGGCCAUCGACAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAAUCAAAUCAGUCGCAGUCGUGU
.(((((((...(((....)))........(((((....)))))))))))).......((.((((((.((((.(.....)...)))).)))))).)).. ( -28.10)
>consensus
CUGGCUAUCUGGGGAUAUCUCACUAUCUGGCCAUCGACAUGGCAUGGCCAUUACAAAACAAUUGCGUUUGAGGAAAAUCAAAUCAGCCGCAGUCGUGU
.(((((((....(((((......))))).(((((....)))))))))))).......((.((((((.((((.(.....)...)))).)))))).)).. (-27.84 = -27.68 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:29 2006