Locus 7256

Sequence ID X_DroMel_CAF1
Location 18,097,198 – 18,097,288
Length 90
Max. P 0.931690
window11881

overview

Window 1

Location 18,097,198 – 18,097,288
Length 90
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 79.23
Mean single sequence MFE -44.02
Consensus MFE -31.69
Energy contribution -31.77
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.72
SVM decision value 1.21
SVM RNA-class probability 0.931690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18097198 90 + 22224390
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGACAGAGCUGCGUUCGGUGGUGCGGUGGUUCAGU----------------GGUGCGUGGAUGCGAGGAAG------------
(((..((.((((.((((..(.(((((((((.((((((.......))))))))))))))).)..))...))----------------..))))))..))).......------------ ( -36.30)
>DroSec_CAF1 5831 97 + 1
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGAAAGAGCUGCGUUCGGUGGUGCGGUGGUUCAGU----------------GGUGCGUGGAUGCGCGGAAGCGAGGAU-----
(((..((.((((.((((..(.(((((((((.((((((.......))))))))))))))).)..))...))----------------..))))))..)))((....))......----- ( -41.30)
>DroSim_CAF1 5861 113 + 1
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGACAGAGCUGCGUUCGGUGGUGCGGUGGUUCAGUGGUGCGGUGGCUCAGUGGUGCGUGGAUGCGAGGAAACGAGGAU-----
(((..((.((((.((((..(.((((((((((...((.((...((..(.....)..))...)).)))))))))))).)..))...))..))))))..)))..(....)......----- ( -43.80)
>DroEre_CAF1 3957 101 + 1
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGGCGGAGCUGCGCUCGGUGGUGCGGUGGUG--------CGGCGGCUCAGUGGUGCGUGGCCACGAGGAGGCGA---------
.............((((..(.((((((((((..((((((...)))))).)))))))))).)..)))--------)..((.(((.(((((.....)))))...))).)).--------- ( -51.70)
>DroYak_CAF1 4762 118 + 1
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGACAGAGCUGCGUUCGGUGGUGCGGUGGCUCAAUGGCUCAGUGGCUCAGUGGUGCGUGGAUGCGAGGAUCCGAAGAUCGGAG
(((..((.((((.((((..(.(((((((((.((((((.......))))))))))))))).)..))....(((((....))).))))..))))))..))).....((((.....)))). ( -47.00)
>consensus
GCGAACAAUGUAAGCGCUGCGGCACCGCUGGAAUGCGACAGAGCUGCGUUCGGUGGUGCGGUGGUUCAGU____C_G_GGCUCAGUGGUGCGUGGAUGCGAGGAAGCGA_GAU_____
(((..((.((((...((..(.(((((((((.((((((.......))))))))))))))).)..)).......................))))))..)))................... (-31.69 = -31.77 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:21 2006