| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,094,198 – 18,094,311 |
| Length | 113 |
| Max. P | 0.999955 |
| Location | 18,094,198 – 18,094,311 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.25 |
| Mean single sequence MFE | -21.37 |
| Consensus MFE | -15.93 |
| Energy contribution | -17.93 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.75 |
| SVM decision value | 4.84 |
| SVM RNA-class probability | 0.999955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18094198 113 - 22224390 CCCAAUGUCCUGAUCUUCGAUCUCUGAUCCUUUUGGGCCCUUUGUUCGCUGCUAACUGUUUCGGGC-CGGGCCCAUCCCUUUCAGCCUCUCUACCUCUCCCUCACGCUAACCUC ...........((((...)))).((((......(((((((...(((((..((.....))..)))))-.)))))))......))))............................. ( -26.50) >DroSec_CAF1 2898 97 - 1 CCCAAUGUCCUGAUCUUCGAUCUCUGAUCCUUUUGGGCCCUUUGUUCGCUGCUAACUGUUUCGGGCCCAGGCCCAUCCCUUCCAGCCUCU-----------------CUACCUC .........(((......((((...))))....((((((....(((((..((.....))..)))))...)))))).......))).....-----------------....... ( -20.70) >DroEre_CAF1 1234 89 - 1 -------UCCUGAUCUCCGAUCUGCGAUCCUUU-GGGCCCUUUGUUCGCUGCUAACUGUUU------CGGGCCCAUCCCACACCACAUUGCACCCUCCCCUUC----------- -------....((((...))))((((((....(-((((((.....................------.)))))))...........))))))...........----------- ( -16.91) >consensus CCCAAUGUCCUGAUCUUCGAUCUCUGAUCCUUUUGGGCCCUUUGUUCGCUGCUAACUGUUUCGGGC_CGGGCCCAUCCCUUACAGCCUCUC__CCUC_CC_UC______ACCUC ...........((((..........)))).....((((((...(((((..((.....))..)))))..))))))........................................ (-15.93 = -17.93 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:16 2006