Locus 7253

Sequence ID X_DroMel_CAF1
Location 18,093,439 – 18,093,555
Length 116
Max. P 0.996505
window11874

overview

Window 4

Location 18,093,439 – 18,093,555
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 71.10
Mean single sequence MFE -38.60
Consensus MFE -28.90
Energy contribution -29.80
Covariance contribution 0.90
Combinations/Pair 1.13
Mean z-score -1.68
Structure conservation index 0.75
SVM decision value 2.71
SVM RNA-class probability 0.996505
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18093439 116 + 22224390
AAUAGUUGUGGGGCUCGCAAGGGCUCUUUUCAAACGUUCUCAGCACGGCCUCCCUGAUUGGAUGGGGGAUUGGGGUUGGCUUAUGAUGGAGCUCCAGCAUAUUUGAGCUGUGAGUG
.....(((.(((((((....)))))))...))).(((((.((((..((((.(((..(((........)))..)))..))))((((.(((....))).)))).....)))).))))) ( -42.90)
>DroSec_CAF1 2139 114 + 1
AAUAGUUGUGGGGCCCGCAAGGGCUCUUUUCGAACGUUCUCAGCACGGCCUCCCUGAUUCGAUUGGGGGU-GGGGUUGGUCUG-GUUGUAGCUCCAGCAUAUUUGAGUUGUGAGUG
.....(((.(((((((....)))))))...)))(((...((((..((((((((((.(......).)))).-.))))))..)))-).))).((((((((........)))).)))). ( -42.00)
>DroSim_CAF1 2131 114 + 1
AAUAGUUGUGGGGCUCGCAAGGGCUCCUUUCGAACGUUCUCAGCACGGCCUCCCUGAUUCGGUGGGGGGU-GGGGUUNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
....((((.(((((((....)))))))....((....)).)))).(.(((((((.........)))))))-.)..........-................................ ( -30.90)
>consensus
AAUAGUUGUGGGGCUCGCAAGGGCUCUUUUCGAACGUUCUCAGCACGGCCUCCCUGAUUCGAUGGGGGGU_GGGGUUGG__U__G_UG_AGCUCCAGCAUAUUUGAG_UGUGAGUG
.....(((.(((((((....)))))))...))).......((((.(.(((((((.........))))))).)..))))............((((((((........)))).)))). (-28.90 = -29.80 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:15 2006